Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00500

Experiment: 30_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00495 and AMB_RS00500 are separated by 169 nucleotidesAMB_RS00500 and AMB_RS00505 are separated by 25 nucleotides AMB_RS00495: AMB_RS00495 - hypothetical protein, at 110,651 to 112,477 _RS00495 AMB_RS00500: AMB_RS00500 - polysaccharide biosynthesis protein, at 112,647 to 114,548 _RS00500 AMB_RS00505: AMB_RS00505 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH, at 114,574 to 116,154 _RS00505 Position (kb) 112 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1at 112.501 kb on + strandat 112.501 kb on + strandat 112.501 kb on + strandat 112.501 kb on + strandat 112.501 kb on + strandat 112.501 kb on + strandat 112.502 kb on - strandat 112.502 kb on - strandat 112.502 kb on - strandat 112.502 kb on - strandat 112.505 kb on + strandat 112.536 kb on + strandat 112.537 kb on - strandat 112.574 kb on + strandat 114.519 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_nonmag_2
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112,501 + -2.1
112,501 + -0.4
112,501 + -3.2
112,501 + -1.3
112,501 + -0.6
112,501 + -0.7
112,502 - +0.1
112,502 - -0.2
112,502 - -0.1
112,502 - +0.1
112,505 + +0.4
112,536 + +0.6
112,537 - +0.3
112,574 + -0.8
114,519 + -1.3

Or see this region's nucleotide sequence