Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21195

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21190 and ABIE41_RS21195 are separated by 239 nucleotidesABIE41_RS21195 and ABIE41_RS21200 are separated by 272 nucleotides ABIE41_RS21190: ABIE41_RS21190 - agmatinase, at 4,355,807 to 4,356,859 _RS21190 ABIE41_RS21195: ABIE41_RS21195 - TRAP transporter substrate-binding protein, at 4,357,099 to 4,358,184 _RS21195 ABIE41_RS21200: ABIE41_RS21200 - TRAP transporter substrate-binding protein, at 4,358,457 to 4,359,551 _RS21200 Position (kb) 4357 4358 4359Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4356.168 kb on + strand, within ABIE41_RS21190at 4356.168 kb on + strand, within ABIE41_RS21190at 4356.169 kb on - strand, within ABIE41_RS21190at 4356.186 kb on + strand, within ABIE41_RS21190at 4356.186 kb on + strand, within ABIE41_RS21190at 4356.187 kb on - strand, within ABIE41_RS21190at 4356.372 kb on + strand, within ABIE41_RS21190at 4356.376 kb on - strand, within ABIE41_RS21190at 4356.376 kb on - strand, within ABIE41_RS21190at 4356.478 kb on - strand, within ABIE41_RS21190at 4356.478 kb on - strand, within ABIE41_RS21190at 4356.700 kb on - strand, within ABIE41_RS21190at 4356.799 kb on + strandat 4356.822 kb on + strandat 4356.823 kb on - strandat 4356.918 kb on + strandat 4356.918 kb on + strandat 4356.918 kb on + strandat 4357.015 kb on + strandat 4357.016 kb on - strandat 4357.016 kb on - strandat 4357.098 kb on + strandat 4357.237 kb on + strand, within ABIE41_RS21195at 4357.237 kb on + strand, within ABIE41_RS21195at 4357.238 kb on - strand, within ABIE41_RS21195at 4357.238 kb on - strand, within ABIE41_RS21195at 4357.390 kb on + strand, within ABIE41_RS21195at 4357.391 kb on - strand, within ABIE41_RS21195at 4357.391 kb on - strand, within ABIE41_RS21195at 4357.393 kb on + strand, within ABIE41_RS21195at 4357.393 kb on + strand, within ABIE41_RS21195at 4357.393 kb on + strand, within ABIE41_RS21195at 4357.393 kb on + strand, within ABIE41_RS21195at 4357.394 kb on - strand, within ABIE41_RS21195at 4357.394 kb on - strand, within ABIE41_RS21195at 4357.394 kb on - strand, within ABIE41_RS21195at 4357.394 kb on - strand, within ABIE41_RS21195at 4357.394 kb on - strand, within ABIE41_RS21195at 4357.396 kb on + strand, within ABIE41_RS21195at 4357.396 kb on + strand, within ABIE41_RS21195at 4357.396 kb on + strand, within ABIE41_RS21195at 4357.396 kb on + strand, within ABIE41_RS21195at 4357.396 kb on + strand, within ABIE41_RS21195at 4357.397 kb on - strand, within ABIE41_RS21195at 4357.397 kb on - strand, within ABIE41_RS21195at 4357.397 kb on - strand, within ABIE41_RS21195at 4357.397 kb on - strand, within ABIE41_RS21195at 4357.397 kb on - strand, within ABIE41_RS21195at 4357.397 kb on - strand, within ABIE41_RS21195at 4357.397 kb on - strand, within ABIE41_RS21195at 4357.477 kb on + strand, within ABIE41_RS21195at 4357.531 kb on + strand, within ABIE41_RS21195at 4357.531 kb on + strand, within ABIE41_RS21195at 4357.531 kb on + strand, within ABIE41_RS21195at 4357.531 kb on + strand, within ABIE41_RS21195at 4357.531 kb on + strand, within ABIE41_RS21195at 4357.532 kb on - strand, within ABIE41_RS21195at 4357.699 kb on + strand, within ABIE41_RS21195at 4357.699 kb on + strand, within ABIE41_RS21195at 4357.699 kb on + strand, within ABIE41_RS21195at 4357.700 kb on - strand, within ABIE41_RS21195at 4357.700 kb on - strand, within ABIE41_RS21195at 4357.792 kb on + strand, within ABIE41_RS21195at 4357.793 kb on - strand, within ABIE41_RS21195at 4357.795 kb on + strand, within ABIE41_RS21195at 4357.795 kb on + strand, within ABIE41_RS21195at 4357.796 kb on - strand, within ABIE41_RS21195at 4357.796 kb on - strand, within ABIE41_RS21195at 4357.798 kb on + strand, within ABIE41_RS21195at 4357.799 kb on - strand, within ABIE41_RS21195at 4357.799 kb on - strand, within ABIE41_RS21195at 4357.799 kb on - strand, within ABIE41_RS21195at 4357.876 kb on + strand, within ABIE41_RS21195at 4357.876 kb on + strand, within ABIE41_RS21195at 4357.876 kb on + strand, within ABIE41_RS21195at 4357.876 kb on + strand, within ABIE41_RS21195at 4357.877 kb on - strand, within ABIE41_RS21195at 4357.906 kb on + strand, within ABIE41_RS21195at 4357.906 kb on + strand, within ABIE41_RS21195at 4357.933 kb on + strand, within ABIE41_RS21195at 4357.934 kb on - strand, within ABIE41_RS21195at 4358.044 kb on + strand, within ABIE41_RS21195at 4358.045 kb on - strand, within ABIE41_RS21195at 4358.119 kb on + strandat 4358.120 kb on - strandat 4358.120 kb on - strandat 4358.120 kb on - strandat 4358.120 kb on - strandat 4358.595 kb on + strand, within ABIE41_RS21200at 4358.596 kb on - strand, within ABIE41_RS21200at 4358.596 kb on - strand, within ABIE41_RS21200at 4358.596 kb on - strand, within ABIE41_RS21200at 4358.596 kb on - strand, within ABIE41_RS21200at 4358.596 kb on - strand, within ABIE41_RS21200at 4358.748 kb on + strand, within ABIE41_RS21200at 4358.751 kb on + strand, within ABIE41_RS21200at 4358.751 kb on + strand, within ABIE41_RS21200at 4358.751 kb on + strand, within ABIE41_RS21200at 4358.751 kb on + strand, within ABIE41_RS21200at 4358.751 kb on + strand, within ABIE41_RS21200at 4358.752 kb on - strand, within ABIE41_RS21200at 4358.754 kb on + strand, within ABIE41_RS21200at 4358.754 kb on + strand, within ABIE41_RS21200at 4358.755 kb on - strand, within ABIE41_RS21200at 4358.755 kb on - strand, within ABIE41_RS21200at 4358.755 kb on - strand, within ABIE41_RS21200at 4358.755 kb on - strand, within ABIE41_RS21200at 4358.835 kb on + strand, within ABIE41_RS21200at 4358.835 kb on + strand, within ABIE41_RS21200at 4358.835 kb on + strand, within ABIE41_RS21200at 4358.836 kb on - strand, within ABIE41_RS21200at 4358.836 kb on - strand, within ABIE41_RS21200at 4358.837 kb on - strand, within ABIE41_RS21200at 4358.889 kb on + strand, within ABIE41_RS21200at 4358.889 kb on + strand, within ABIE41_RS21200at 4358.889 kb on + strand, within ABIE41_RS21200at 4358.890 kb on - strand, within ABIE41_RS21200at 4358.890 kb on - strand, within ABIE41_RS21200at 4359.057 kb on + strand, within ABIE41_RS21200at 4359.057 kb on + strand, within ABIE41_RS21200at 4359.057 kb on + strand, within ABIE41_RS21200at 4359.058 kb on - strand, within ABIE41_RS21200at 4359.058 kb on - strand, within ABIE41_RS21200at 4359.058 kb on - strand, within ABIE41_RS21200at 4359.058 kb on - strand, within ABIE41_RS21200at 4359.150 kb on + strand, within ABIE41_RS21200at 4359.150 kb on + strand, within ABIE41_RS21200at 4359.151 kb on - strand, within ABIE41_RS21200at 4359.151 kb on - strand, within ABIE41_RS21200at 4359.151 kb on - strand, within ABIE41_RS21200at 4359.151 kb on - strand, within ABIE41_RS21200at 4359.151 kb on - strand, within ABIE41_RS21200at 4359.151 kb on - strand, within ABIE41_RS21200at 4359.151 kb on - strand, within ABIE41_RS21200at 4359.153 kb on + strand, within ABIE41_RS21200

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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4,356,168 + ABIE41_RS21190 0.34 +0.3
4,356,168 + ABIE41_RS21190 0.34 +0.1
4,356,169 - ABIE41_RS21190 0.34 +0.5
4,356,186 + ABIE41_RS21190 0.36 -0.4
4,356,186 + ABIE41_RS21190 0.36 +0.6
4,356,187 - ABIE41_RS21190 0.36 -1.3
4,356,372 + ABIE41_RS21190 0.54 +0.3
4,356,376 - ABIE41_RS21190 0.54 -2.9
4,356,376 - ABIE41_RS21190 0.54 +0.2
4,356,478 - ABIE41_RS21190 0.64 +1.8
4,356,478 - ABIE41_RS21190 0.64 +0.6
4,356,700 - ABIE41_RS21190 0.85 -0.3
4,356,799 + -0.3
4,356,822 + +0.5
4,356,823 - -3.0
4,356,918 + -0.4
4,356,918 + -0.1
4,356,918 + +0.1
4,357,015 + +0.8
4,357,016 - +0.7
4,357,016 - -0.6
4,357,098 + +0.5
4,357,237 + ABIE41_RS21195 0.13 +0.9
4,357,237 + ABIE41_RS21195 0.13 -0.2
4,357,238 - ABIE41_RS21195 0.13 +0.4
4,357,238 - ABIE41_RS21195 0.13 +2.4
4,357,390 + ABIE41_RS21195 0.27 +1.9
4,357,391 - ABIE41_RS21195 0.27 +1.4
4,357,391 - ABIE41_RS21195 0.27 -1.0
4,357,393 + ABIE41_RS21195 0.27 +0.1
4,357,393 + ABIE41_RS21195 0.27 +0.3
4,357,393 + ABIE41_RS21195 0.27 +1.0
4,357,393 + ABIE41_RS21195 0.27 -0.0
4,357,394 - ABIE41_RS21195 0.27 -0.1
4,357,394 - ABIE41_RS21195 0.27 -0.2
4,357,394 - ABIE41_RS21195 0.27 -0.8
4,357,394 - ABIE41_RS21195 0.27 -0.1
4,357,394 - ABIE41_RS21195 0.27 -0.2
4,357,396 + ABIE41_RS21195 0.27 +0.4
4,357,396 + ABIE41_RS21195 0.27 +0.9
4,357,396 + ABIE41_RS21195 0.27 -0.2
4,357,396 + ABIE41_RS21195 0.27 -0.8
4,357,396 + ABIE41_RS21195 0.27 +1.9
4,357,397 - ABIE41_RS21195 0.27 +0.0
4,357,397 - ABIE41_RS21195 0.27 +0.4
4,357,397 - ABIE41_RS21195 0.27 -2.1
4,357,397 - ABIE41_RS21195 0.27 +0.4
4,357,397 - ABIE41_RS21195 0.27 +1.8
4,357,397 - ABIE41_RS21195 0.27 +0.3
4,357,397 - ABIE41_RS21195 0.27 +1.2
4,357,477 + ABIE41_RS21195 0.35 -0.8
4,357,531 + ABIE41_RS21195 0.40 -1.7
4,357,531 + ABIE41_RS21195 0.40 +0.2
4,357,531 + ABIE41_RS21195 0.40 +0.8
4,357,531 + ABIE41_RS21195 0.40 +0.0
4,357,531 + ABIE41_RS21195 0.40 +0.6
4,357,532 - ABIE41_RS21195 0.40 +0.8
4,357,699 + ABIE41_RS21195 0.55 +0.1
4,357,699 + ABIE41_RS21195 0.55 +0.6
4,357,699 + ABIE41_RS21195 0.55 +0.8
4,357,700 - ABIE41_RS21195 0.55 +0.8
4,357,700 - ABIE41_RS21195 0.55 +0.5
4,357,792 + ABIE41_RS21195 0.64 +0.5
4,357,793 - ABIE41_RS21195 0.64 +1.4
4,357,795 + ABIE41_RS21195 0.64 -1.0
4,357,795 + ABIE41_RS21195 0.64 -0.0
4,357,796 - ABIE41_RS21195 0.64 +0.6
4,357,796 - ABIE41_RS21195 0.64 -0.1
4,357,798 + ABIE41_RS21195 0.64 +0.6
4,357,799 - ABIE41_RS21195 0.64 +0.3
4,357,799 - ABIE41_RS21195 0.64 +0.8
4,357,799 - ABIE41_RS21195 0.64 +1.2
4,357,876 + ABIE41_RS21195 0.72 -0.2
4,357,876 + ABIE41_RS21195 0.72 +3.0
4,357,876 + ABIE41_RS21195 0.72 +1.2
4,357,876 + ABIE41_RS21195 0.72 +0.1
4,357,877 - ABIE41_RS21195 0.72 +0.3
4,357,906 + ABIE41_RS21195 0.74 +2.2
4,357,906 + ABIE41_RS21195 0.74 -0.2
4,357,933 + ABIE41_RS21195 0.77 +0.7
4,357,934 - ABIE41_RS21195 0.77 +0.1
4,358,044 + ABIE41_RS21195 0.87 +0.1
4,358,045 - ABIE41_RS21195 0.87 -0.2
4,358,119 + -0.2
4,358,120 - +0.3
4,358,120 - +0.8
4,358,120 - -0.8
4,358,120 - +0.4
4,358,595 + ABIE41_RS21200 0.13 +0.3
4,358,596 - ABIE41_RS21200 0.13 -1.1
4,358,596 - ABIE41_RS21200 0.13 +1.6
4,358,596 - ABIE41_RS21200 0.13 -1.4
4,358,596 - ABIE41_RS21200 0.13 -0.4
4,358,596 - ABIE41_RS21200 0.13 +1.6
4,358,748 + ABIE41_RS21200 0.27 +0.9
4,358,751 + ABIE41_RS21200 0.27 -0.8
4,358,751 + ABIE41_RS21200 0.27 -0.5
4,358,751 + ABIE41_RS21200 0.27 +0.4
4,358,751 + ABIE41_RS21200 0.27 +0.4
4,358,751 + ABIE41_RS21200 0.27 -0.8
4,358,752 - ABIE41_RS21200 0.27 +0.2
4,358,754 + ABIE41_RS21200 0.27 +0.6
4,358,754 + ABIE41_RS21200 0.27 +1.0
4,358,755 - ABIE41_RS21200 0.27 -0.0
4,358,755 - ABIE41_RS21200 0.27 +0.1
4,358,755 - ABIE41_RS21200 0.27 +1.0
4,358,755 - ABIE41_RS21200 0.27 +0.3
4,358,835 + ABIE41_RS21200 0.35 +0.3
4,358,835 + ABIE41_RS21200 0.35 +0.3
4,358,835 + ABIE41_RS21200 0.35 +0.1
4,358,836 - ABIE41_RS21200 0.35 +0.9
4,358,836 - ABIE41_RS21200 0.35 +0.8
4,358,837 - ABIE41_RS21200 0.35 +0.2
4,358,889 + ABIE41_RS21200 0.39 -0.5
4,358,889 + ABIE41_RS21200 0.39 -0.6
4,358,889 + ABIE41_RS21200 0.39 +0.7
4,358,890 - ABIE41_RS21200 0.40 -0.2
4,358,890 - ABIE41_RS21200 0.40 +0.2
4,359,057 + ABIE41_RS21200 0.55 -2.1
4,359,057 + ABIE41_RS21200 0.55 +0.9
4,359,057 + ABIE41_RS21200 0.55 -1.0
4,359,058 - ABIE41_RS21200 0.55 -1.5
4,359,058 - ABIE41_RS21200 0.55 -0.4
4,359,058 - ABIE41_RS21200 0.55 +0.2
4,359,058 - ABIE41_RS21200 0.55 -0.2
4,359,150 + ABIE41_RS21200 0.63 +0.2
4,359,150 + ABIE41_RS21200 0.63 -0.2
4,359,151 - ABIE41_RS21200 0.63 -0.8
4,359,151 - ABIE41_RS21200 0.63 -0.1
4,359,151 - ABIE41_RS21200 0.63 -0.8
4,359,151 - ABIE41_RS21200 0.63 +0.6
4,359,151 - ABIE41_RS21200 0.63 +0.1
4,359,151 - ABIE41_RS21200 0.63 -2.0
4,359,151 - ABIE41_RS21200 0.63 -1.9
4,359,153 + ABIE41_RS21200 0.64 -1.0

Or see this region's nucleotide sequence