Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16885 and ABIE41_RS16890 are separated by 303 nucleotides ABIE41_RS16890 and ABIE41_RS16895 are separated by 93 nucleotides ABIE41_RS16895 and ABIE41_RS16900 are separated by 219 nucleotides
ABIE41_RS16885: ABIE41_RS16885 - NAD(P)H-hydrate dehydratase, at 3,478,365 to 3,479,870
_RS16885
ABIE41_RS16890: ABIE41_RS16890 - P-II family nitrogen regulator, at 3,480,174 to 3,480,512
_RS16890
ABIE41_RS16895: ABIE41_RS16895 - type I glutamate--ammonia ligase, at 3,480,606 to 3,482,015
_RS16895
ABIE41_RS16900: ABIE41_RS16900 - glycosyltransferase family 1 protein, at 3,482,235 to 3,483,332
_RS16900
Position (kb)
3480
3481
3482
3483 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3479.622 kb on + strand, within ABIE41_RS16885 at 3479.951 kb on + strand at 3480.030 kb on + strand at 3480.553 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand at 3480.590 kb on + strand at 3482.010 kb on + strand at 3482.010 kb on + strand at 3482.010 kb on + strand at 3482.182 kb on - strand at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.814 kb on + strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.815 kb on - strand, within ABIE41_RS16900 at 3482.821 kb on + strand, within ABIE41_RS16900 at 3482.821 kb on + strand, within ABIE41_RS16900 at 3482.822 kb on - strand, within ABIE41_RS16900
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 3,479,622 + ABIE41_RS16885 0.83 -0.1 3,479,951 + -0.1 3,480,030 + +0.4 3,480,553 + -0.8 3,480,590 + +1.2 3,480,590 + +0.8 3,480,590 + -0.3 3,480,590 + +0.9 3,480,590 + -0.2 3,482,010 + +0.7 3,482,010 + +1.0 3,482,010 + +0.8 3,482,182 - -0.4 3,482,814 + ABIE41_RS16900 0.53 +0.7 3,482,814 + ABIE41_RS16900 0.53 -1.1 3,482,814 + ABIE41_RS16900 0.53 +0.4 3,482,814 + ABIE41_RS16900 0.53 +0.0 3,482,814 + ABIE41_RS16900 0.53 -2.0 3,482,815 - ABIE41_RS16900 0.53 +1.2 3,482,815 - ABIE41_RS16900 0.53 -0.3 3,482,815 - ABIE41_RS16900 0.53 -0.0 3,482,815 - ABIE41_RS16900 0.53 +0.8 3,482,815 - ABIE41_RS16900 0.53 +1.8 3,482,821 + ABIE41_RS16900 0.53 -0.1 3,482,821 + ABIE41_RS16900 0.53 -1.9 3,482,822 - ABIE41_RS16900 0.53 +1.0
Or see this region's nucleotide sequence