Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26670

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS26670 and ABIE40_RS26675 are separated by 110 nucleotides ABIE40_RS26670: ABIE40_RS26670 - hypothetical protein, at 55,358 to 55,669 _RS26670 ABIE40_RS26675: ABIE40_RS26675 - alpha-amylase family protein, at 55,780 to 57,441 _RS26675 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.477 kb on + strandat 54.478 kb on - strandat 54.508 kb on + strandat 54.509 kb on - strandat 54.597 kb on - strandat 54.597 kb on - strandat 54.612 kb on - strandat 54.712 kb on + strandat 54.756 kb on - strandat 54.807 kb on + strandat 54.936 kb on + strandat 54.936 kb on + strandat 54.936 kb on + strandat 54.937 kb on - strandat 54.975 kb on + strandat 54.986 kb on + strandat 55.029 kb on + strandat 55.191 kb on - strandat 55.191 kb on - strandat 55.331 kb on + strandat 55.332 kb on - strandat 55.505 kb on - strand, within ABIE40_RS26670at 55.799 kb on - strandat 55.816 kb on + strandat 55.816 kb on + strandat 55.816 kb on + strandat 55.816 kb on + strandat 55.817 kb on - strandat 55.817 kb on - strandat 55.839 kb on + strandat 55.842 kb on - strandat 55.897 kb on + strandat 55.897 kb on + strandat 55.898 kb on - strandat 55.898 kb on - strandat 55.969 kb on + strand, within ABIE40_RS26675at 55.970 kb on - strand, within ABIE40_RS26675at 55.970 kb on - strand, within ABIE40_RS26675at 55.970 kb on - strand, within ABIE40_RS26675at 55.970 kb on - strand, within ABIE40_RS26675at 55.970 kb on - strand, within ABIE40_RS26675at 55.987 kb on + strand, within ABIE40_RS26675at 55.987 kb on + strand, within ABIE40_RS26675at 55.988 kb on - strand, within ABIE40_RS26675at 55.988 kb on - strand, within ABIE40_RS26675at 55.988 kb on - strand, within ABIE40_RS26675at 55.988 kb on - strand, within ABIE40_RS26675at 55.990 kb on - strand, within ABIE40_RS26675at 55.990 kb on - strand, within ABIE40_RS26675at 56.134 kb on - strand, within ABIE40_RS26675at 56.158 kb on + strand, within ABIE40_RS26675at 56.158 kb on + strand, within ABIE40_RS26675at 56.158 kb on + strand, within ABIE40_RS26675at 56.158 kb on + strand, within ABIE40_RS26675at 56.158 kb on + strand, within ABIE40_RS26675at 56.159 kb on - strand, within ABIE40_RS26675at 56.159 kb on - strand, within ABIE40_RS26675at 56.162 kb on + strand, within ABIE40_RS26675at 56.162 kb on + strand, within ABIE40_RS26675at 56.162 kb on + strand, within ABIE40_RS26675at 56.162 kb on + strand, within ABIE40_RS26675at 56.163 kb on - strand, within ABIE40_RS26675at 56.257 kb on + strand, within ABIE40_RS26675at 56.261 kb on - strand, within ABIE40_RS26675at 56.397 kb on + strand, within ABIE40_RS26675at 56.397 kb on + strand, within ABIE40_RS26675at 56.397 kb on + strand, within ABIE40_RS26675at 56.398 kb on - strand, within ABIE40_RS26675at 56.398 kb on - strand, within ABIE40_RS26675at 56.605 kb on + strand, within ABIE40_RS26675at 56.640 kb on - strand, within ABIE40_RS26675at 56.659 kb on + strand, within ABIE40_RS26675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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54,477 + -0.0
54,478 - -1.2
54,508 + +0.1
54,509 - +0.4
54,597 - -1.5
54,597 - +1.1
54,612 - -0.0
54,712 + +0.7
54,756 - +1.4
54,807 + -0.4
54,936 + -1.0
54,936 + -0.4
54,936 + -0.1
54,937 - +0.6
54,975 + -0.7
54,986 + +0.9
55,029 + +0.1
55,191 - +1.3
55,191 - +1.4
55,331 + +0.1
55,332 - +0.8
55,505 - ABIE40_RS26670 0.47 -1.7
55,799 - -0.5
55,816 + -2.4
55,816 + +0.0
55,816 + +0.3
55,816 + +0.1
55,817 - -0.3
55,817 - -0.5
55,839 + +0.0
55,842 - -0.4
55,897 + +1.0
55,897 + +0.1
55,898 - -1.0
55,898 - -1.2
55,969 + ABIE40_RS26675 0.11 +0.3
55,970 - ABIE40_RS26675 0.11 +0.7
55,970 - ABIE40_RS26675 0.11 -1.0
55,970 - ABIE40_RS26675 0.11 +0.7
55,970 - ABIE40_RS26675 0.11 -1.3
55,970 - ABIE40_RS26675 0.11 +0.0
55,987 + ABIE40_RS26675 0.12 +0.2
55,987 + ABIE40_RS26675 0.12 +0.5
55,988 - ABIE40_RS26675 0.13 +0.1
55,988 - ABIE40_RS26675 0.13 -0.8
55,988 - ABIE40_RS26675 0.13 +1.0
55,988 - ABIE40_RS26675 0.13 -0.4
55,990 - ABIE40_RS26675 0.13 -0.3
55,990 - ABIE40_RS26675 0.13 -2.6
56,134 - ABIE40_RS26675 0.21 +0.8
56,158 + ABIE40_RS26675 0.23 +0.8
56,158 + ABIE40_RS26675 0.23 +0.5
56,158 + ABIE40_RS26675 0.23 +0.8
56,158 + ABIE40_RS26675 0.23 +0.1
56,158 + ABIE40_RS26675 0.23 -0.5
56,159 - ABIE40_RS26675 0.23 +0.6
56,159 - ABIE40_RS26675 0.23 +0.4
56,162 + ABIE40_RS26675 0.23 -0.5
56,162 + ABIE40_RS26675 0.23 +0.1
56,162 + ABIE40_RS26675 0.23 +1.5
56,162 + ABIE40_RS26675 0.23 -0.6
56,163 - ABIE40_RS26675 0.23 +0.8
56,257 + ABIE40_RS26675 0.29 +1.1
56,261 - ABIE40_RS26675 0.29 +1.2
56,397 + ABIE40_RS26675 0.37 -0.6
56,397 + ABIE40_RS26675 0.37 +0.0
56,397 + ABIE40_RS26675 0.37 +0.2
56,398 - ABIE40_RS26675 0.37 -0.0
56,398 - ABIE40_RS26675 0.37 +0.0
56,605 + ABIE40_RS26675 0.50 +0.8
56,640 - ABIE40_RS26675 0.52 +0.1
56,659 + ABIE40_RS26675 0.53 -0.7

Or see this region's nucleotide sequence