Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24830

Experiment: D-Serine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (C)
1,121,193	+		ABIE40_RS24825	0.45	+0.5
1,121,193	+		ABIE40_RS24825	0.45	-0.4
1,121,194	-		ABIE40_RS24825	0.46	-1.1
1,121,194	-		ABIE40_RS24825	0.46	+0.4
1,121,194	-		ABIE40_RS24825	0.46	+0.2
1,121,235	-		ABIE40_RS24825	0.48	+0.3
1,121,243	+		ABIE40_RS24825	0.49	-1.7
1,121,243	+		ABIE40_RS24825	0.49	-0.1
1,121,243	+		ABIE40_RS24825	0.49	+1.2
1,121,243	+		ABIE40_RS24825	0.49	-1.0
1,121,244	-		ABIE40_RS24825	0.49	+0.4
1,121,244	-		ABIE40_RS24825	0.49	+1.5
1,121,244	-		ABIE40_RS24825	0.49	+0.7
1,121,244	-		ABIE40_RS24825	0.49	+0.9
1,121,245	+		ABIE40_RS24825	0.49	-0.0
1,121,245	+		ABIE40_RS24825	0.49	+0.3
1,121,245	+		ABIE40_RS24825	0.49	-0.2
1,121,245	+		ABIE40_RS24825	0.49	+1.1
1,121,245	+		ABIE40_RS24825	0.49	-0.8
1,121,245	+		ABIE40_RS24825	0.49	+0.7
1,121,245	+		ABIE40_RS24825	0.49	+0.4
1,121,246	-		ABIE40_RS24825	0.49	+1.1
1,121,246	-		ABIE40_RS24825	0.49	-1.3
1,121,246	-		ABIE40_RS24825	0.49	-0.4
1,121,246	-		ABIE40_RS24825	0.49	-0.1
1,121,246	-		ABIE40_RS24825	0.49	+0.8
1,121,248	+		ABIE40_RS24825	0.49	-0.9
1,121,248	+		ABIE40_RS24825	0.49	-0.0
1,121,248	+		ABIE40_RS24825	0.49	+1.4
1,121,249	-		ABIE40_RS24825	0.49	+0.5
1,121,249	-		ABIE40_RS24825	0.49	-0.2
1,121,254	+		ABIE40_RS24825	0.49	-0.5
1,121,364	+		ABIE40_RS24825	0.56	+0.1
1,121,364	+		ABIE40_RS24825	0.56	+0.2
1,121,372	-		ABIE40_RS24825	0.57	-0.3
1,121,439	+		ABIE40_RS24825	0.61	-1.9
1,121,439	+		ABIE40_RS24825	0.61	-0.3
1,121,440	-		ABIE40_RS24825	0.61	+0.2
1,121,535	+		ABIE40_RS24825	0.67	-0.3
1,121,535	+		ABIE40_RS24825	0.67	-0.1
1,121,536	-		ABIE40_RS24825	0.67	-0.0
1,121,536	-		ABIE40_RS24825	0.67	-0.9
1,121,536	-		ABIE40_RS24825	0.67	-0.6
1,121,692	-		ABIE40_RS24825	0.77	+0.2
1,121,692	-		ABIE40_RS24825	0.77	-1.1
1,121,692	-		ABIE40_RS24825	0.77	+1.5
1,121,692	-		ABIE40_RS24825	0.77	-0.7
1,121,719	+		ABIE40_RS24825	0.78	+0.9
1,121,719	+		ABIE40_RS24825	0.78	-1.3
1,121,720	-		ABIE40_RS24825	0.79	-0.7
1,121,720	-		ABIE40_RS24825	0.79	-0.2
1,121,720	-		ABIE40_RS24825	0.79	+0.5
1,121,720	-		ABIE40_RS24825	0.79	+0.4
1,121,720	-		ABIE40_RS24825	0.79	+1.0
1,121,720	-		ABIE40_RS24825	0.79	+0.9
1,121,720	-		ABIE40_RS24825	0.79	+1.1
1,122,060	+				+1.4
1,122,060	+				+0.2
1,122,060	+				+1.0
1,122,060	+				-1.0
1,122,060	+				-0.3
1,122,061	-				-0.2
1,122,061	-				+0.5
1,122,061	-				-0.7
1,122,061	-				-0.2
1,122,061	-				+0.2
1,122,101	+				+1.5
1,122,104	+				-0.3
1,122,104	+				+0.5
1,122,105	-				-0.4
1,122,105	-				-0.4
1,122,713	+		ABIE40_RS24830	0.73	-1.5
1,122,713	+		ABIE40_RS24830	0.73	-0.4
1,122,713	+		ABIE40_RS24830	0.73	+0.7
1,122,713	+		ABIE40_RS24830	0.73	-0.6
1,122,713	+		ABIE40_RS24830	0.73	-0.4
1,122,714	-		ABIE40_RS24830	0.73	-2.6
1,122,714	-		ABIE40_RS24830	0.73	-2.9
1,122,717	+		ABIE40_RS24830	0.73	-0.9
1,122,717	+		ABIE40_RS24830	0.73	-1.7
1,122,717	+		ABIE40_RS24830	0.73	+1.2
1,122,717	+		ABIE40_RS24830	0.73	-0.3
1,122,717	+		ABIE40_RS24830	0.73	+0.3
1,122,717	+		ABIE40_RS24830	0.73	+1.0
1,122,717	+		ABIE40_RS24830	0.73	-1.2
1,122,718	-		ABIE40_RS24830	0.73	+0.7
1,122,718	-		ABIE40_RS24830	0.73	-0.3
1,122,718	-		ABIE40_RS24830	0.73	+0.1
1,122,718	-		ABIE40_RS24830	0.73	-0.2
1,122,718	-		ABIE40_RS24830	0.73	-0.8
1,122,718	-		ABIE40_RS24830	0.73	-0.7
1,122,718	-		ABIE40_RS24830	0.73	+0.1
1,122,718	-		ABIE40_RS24830	0.73	-2.6
1,122,758	+		ABIE40_RS24830	0.78	-0.5
1,122,758	+		ABIE40_RS24830	0.78	-0.5
1,122,758	+		ABIE40_RS24830	0.78	-0.5
1,122,759	-		ABIE40_RS24830	0.78	-1.0
1,122,759	-		ABIE40_RS24830	0.78	+0.8
1,122,765	+		ABIE40_RS24830	0.79	+0.1
1,122,765	+		ABIE40_RS24830	0.79	+0.0
1,122,765	+		ABIE40_RS24830	0.79	-0.3
1,122,765	+		ABIE40_RS24830	0.79	+0.7
1,122,766	-		ABIE40_RS24830	0.79	-0.6
1,122,766	-		ABIE40_RS24830	0.79	-0.6
1,122,792	-		ABIE40_RS24830	0.82	-0.4
1,122,876	+				-0.3
1,122,876	+				-0.0
1,122,876	+				+2.0
1,122,876	+				-0.9
1,122,876	+				-1.1
1,122,877	-				-0.1
1,122,877	-				-0.0
1,122,877	-				+0.7
1,122,955	+				-0.0
1,122,955	+				+0.2
1,122,956	-				+1.4
1,122,956	-				-0.3
1,123,159	+		ABIE40_RS24835	0.27	+0.1
1,123,159	+		ABIE40_RS24835	0.27	-0.2
1,123,159	+		ABIE40_RS24835	0.27	-0.4
1,123,159	+		ABIE40_RS24835	0.27	-0.9
1,123,159	+		ABIE40_RS24835	0.27	+1.3
1,123,160	-		ABIE40_RS24835	0.27	-0.8
1,123,246	+		ABIE40_RS24835	0.38	-0.2
1,123,246	+		ABIE40_RS24835	0.38	-1.2
1,123,247	-		ABIE40_RS24835	0.39	+0.1
1,123,247	-		ABIE40_RS24835	0.39	+0.2
1,123,339	+		ABIE40_RS24835	0.51	-1.0
1,123,340	-		ABIE40_RS24835	0.51	-0.6
1,123,378	+		ABIE40_RS24835	0.56	+0.0
1,123,378	+		ABIE40_RS24835	0.56	-0.0
1,123,379	-		ABIE40_RS24835	0.56	-0.4
1,123,379	-		ABIE40_RS24835	0.56	-0.1
1,123,379	-		ABIE40_RS24835	0.56	+0.4
1,123,438	+		ABIE40_RS24835	0.64	-0.1
1,123,438	+		ABIE40_RS24835	0.64	+0.1
1,123,489	+		ABIE40_RS24835	0.70	-0.8
1,123,489	+		ABIE40_RS24835	0.70	-0.5
1,123,490	-		ABIE40_RS24835	0.71	+0.2
1,123,715	+				-0.7
1,123,715	+				-0.8
1,123,715	+				-0.8
1,123,715	+				+0.3
1,123,716	-				+0.5
1,123,716	-				-0.1
1,123,716	-				-0.2
1,123,716	-				-0.8
1,123,716	-				+0.7
1,123,716	-				-1.0
1,123,716	-				-0.2
1,123,716	-				+1.2
1,123,747	-				+0.1
1,123,759	+				-0.1
1,123,759	+				+0.3
1,123,760	-				-1.0
1,123,760	-				+0.1
1,123,760	-				-0.0
1,123,760	-				+0.3
1,123,809	-				+0.3