Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23660 and ABIE40_RS23665 are separated by 42 nucleotides ABIE40_RS23665 and ABIE40_RS23670 are separated by 179 nucleotides ABIE40_RS23670 and ABIE40_RS23675 are separated by 118 nucleotides ABIE40_RS23675 and ABIE40_RS23680 are separated by 40 nucleotides ABIE40_RS23680 and ABIE40_RS23685 are separated by 256 nucleotides
ABIE40_RS23660: ABIE40_RS23660 - GGDEF domain-containing protein, at 874,890 to 875,849
_RS23660
ABIE40_RS23665: ABIE40_RS23665 - hypothetical protein, at 875,892 to 876,125
_RS23665
ABIE40_RS23670: ABIE40_RS23670 - hypothetical protein, at 876,305 to 876,481
_RS23670
ABIE40_RS23675: ABIE40_RS23675 - hypothetical protein, at 876,600 to 876,764
_RS23675
ABIE40_RS23680: ABIE40_RS23680 - hypothetical protein, at 876,805 to 876,972
_RS23680
ABIE40_RS23685: ABIE40_RS23685 - hypothetical protein, at 877,229 to 877,699
_RS23685
Position (kb) 876
877 Strain fitness (log2 ratio) -2
-1
0
1 at 875.320 kb on + strand, within ABIE40_RS23660 at 875.320 kb on + strand, within ABIE40_RS23660 at 875.321 kb on - strand, within ABIE40_RS23660 at 875.321 kb on - strand, within ABIE40_RS23660 at 875.321 kb on - strand, within ABIE40_RS23660 at 875.321 kb on - strand, within ABIE40_RS23660 at 875.321 kb on - strand, within ABIE40_RS23660 at 875.492 kb on + strand, within ABIE40_RS23660 at 875.576 kb on - strand, within ABIE40_RS23660 at 875.610 kb on + strand, within ABIE40_RS23660 at 875.610 kb on + strand, within ABIE40_RS23660 at 875.610 kb on + strand, within ABIE40_RS23660 at 875.610 kb on + strand, within ABIE40_RS23660 at 875.611 kb on - strand, within ABIE40_RS23660 at 875.611 kb on - strand, within ABIE40_RS23660 at 875.611 kb on - strand, within ABIE40_RS23660 at 875.754 kb on + strand at 875.755 kb on - strand at 875.778 kb on + strand at 875.778 kb on + strand at 875.778 kb on + strand at 875.779 kb on - strand at 875.979 kb on + strand, within ABIE40_RS23665 at 875.979 kb on + strand, within ABIE40_RS23665 at 875.980 kb on - strand, within ABIE40_RS23665 at 876.016 kb on - strand, within ABIE40_RS23665 at 876.115 kb on + strand at 876.115 kb on + strand at 876.139 kb on + strand at 876.139 kb on + strand at 876.139 kb on + strand at 876.139 kb on + strand at 876.140 kb on - strand at 876.204 kb on - strand at 876.205 kb on + strand at 876.205 kb on + strand at 876.205 kb on + strand at 876.206 kb on - strand at 876.206 kb on - strand at 876.206 kb on - strand at 876.257 kb on - strand at 876.257 kb on - strand at 876.280 kb on + strand at 876.280 kb on + strand at 876.280 kb on + strand at 876.339 kb on + strand, within ABIE40_RS23670 at 876.354 kb on + strand, within ABIE40_RS23670 at 876.354 kb on + strand, within ABIE40_RS23670 at 876.515 kb on + strand at 876.515 kb on + strand at 876.515 kb on + strand at 876.515 kb on + strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.602 kb on - strand at 876.824 kb on + strand, within ABIE40_RS23680 at 876.824 kb on + strand, within ABIE40_RS23680 at 876.824 kb on + strand, within ABIE40_RS23680 at 876.824 kb on + strand, within ABIE40_RS23680 at 876.933 kb on + strand, within ABIE40_RS23680 at 876.933 kb on + strand, within ABIE40_RS23680 at 876.933 kb on + strand, within ABIE40_RS23680 at 876.934 kb on - strand, within ABIE40_RS23680 at 876.934 kb on - strand, within ABIE40_RS23680 at 876.957 kb on - strand at 876.971 kb on - strand at 877.075 kb on + strand at 877.102 kb on - strand at 877.124 kb on - strand at 877.132 kb on + strand at 877.144 kb on - strand at 877.188 kb on + strand at 877.204 kb on + strand at 877.205 kb on - strand at 877.330 kb on + strand, within ABIE40_RS23685 at 877.331 kb on - strand, within ABIE40_RS23685 at 877.427 kb on + strand, within ABIE40_RS23685 at 877.428 kb on - strand, within ABIE40_RS23685 at 877.428 kb on - strand, within ABIE40_RS23685 at 877.428 kb on - strand, within ABIE40_RS23685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 875,320 + ABIE40_RS23660 0.45 +1.1 875,320 + ABIE40_RS23660 0.45 +1.3 875,321 - ABIE40_RS23660 0.45 -1.0 875,321 - ABIE40_RS23660 0.45 -0.0 875,321 - ABIE40_RS23660 0.45 -1.8 875,321 - ABIE40_RS23660 0.45 -1.0 875,321 - ABIE40_RS23660 0.45 -1.2 875,492 + ABIE40_RS23660 0.63 -1.2 875,576 - ABIE40_RS23660 0.71 -0.6 875,610 + ABIE40_RS23660 0.75 -0.9 875,610 + ABIE40_RS23660 0.75 +1.2 875,610 + ABIE40_RS23660 0.75 -0.7 875,610 + ABIE40_RS23660 0.75 +0.2 875,611 - ABIE40_RS23660 0.75 +0.1 875,611 - ABIE40_RS23660 0.75 +0.8 875,611 - ABIE40_RS23660 0.75 +0.2 875,754 + +1.0 875,755 - -0.1 875,778 + -0.9 875,778 + +0.3 875,778 + -0.4 875,779 - +0.6 875,979 + ABIE40_RS23665 0.37 +1.4 875,979 + ABIE40_RS23665 0.37 -0.0 875,980 - ABIE40_RS23665 0.38 -0.4 876,016 - ABIE40_RS23665 0.53 +0.7 876,115 + +1.2 876,115 + +0.5 876,139 + +1.2 876,139 + -0.2 876,139 + -0.3 876,139 + -0.1 876,140 - +0.8 876,204 - +0.3 876,205 + +0.5 876,205 + +0.5 876,205 + +0.3 876,206 - -0.4 876,206 - +0.8 876,206 - -1.5 876,257 - -0.4 876,257 - -0.1 876,280 + -1.6 876,280 + -0.2 876,280 + -1.6 876,339 + ABIE40_RS23670 0.19 -0.4 876,354 + ABIE40_RS23670 0.28 -0.7 876,354 + ABIE40_RS23670 0.28 -1.8 876,515 + +0.3 876,515 + -2.3 876,515 + +0.1 876,515 + -0.3 876,516 - +0.1 876,516 - -0.7 876,516 - +0.4 876,516 - +0.2 876,516 - -0.5 876,602 - +0.5 876,824 + ABIE40_RS23680 0.11 -0.5 876,824 + ABIE40_RS23680 0.11 -0.0 876,824 + ABIE40_RS23680 0.11 -0.6 876,824 + ABIE40_RS23680 0.11 -1.6 876,933 + ABIE40_RS23680 0.76 -0.2 876,933 + ABIE40_RS23680 0.76 -0.7 876,933 + ABIE40_RS23680 0.76 +1.3 876,934 - ABIE40_RS23680 0.77 +0.2 876,934 - ABIE40_RS23680 0.77 +0.5 876,957 - -0.3 876,971 - +0.0 877,075 + -2.4 877,102 - +0.7 877,124 - +0.6 877,132 + +0.4 877,144 - -1.1 877,188 + +0.5 877,204 + +0.5 877,205 - -0.4 877,330 + ABIE40_RS23685 0.21 -0.9 877,331 - ABIE40_RS23685 0.22 -0.5 877,427 + ABIE40_RS23685 0.42 -0.6 877,428 - ABIE40_RS23685 0.42 -0.3 877,428 - ABIE40_RS23685 0.42 -0.8 877,428 - ABIE40_RS23685 0.42 +0.1
Or see this region's nucleotide sequence