Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23240 and ABIE40_RS23245 are separated by 150 nucleotides ABIE40_RS23245 and ABIE40_RS23250 are separated by 93 nucleotides ABIE40_RS23250 and ABIE40_RS23255 are separated by 67 nucleotides
ABIE40_RS23240: ABIE40_RS23240 - FCD domain-containing protein, at 796,951 to 797,622
_RS23240
ABIE40_RS23245: ABIE40_RS23245 - YigZ family protein, at 797,773 to 798,411
_RS23245
ABIE40_RS23250: ABIE40_RS23250 - hypothetical protein, at 798,505 to 799,401
_RS23250
ABIE40_RS23255: ABIE40_RS23255 - quinolinate synthase NadA, at 799,469 to 800,440
_RS23255
Position (kb) 798
799
800 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 797.745 kb on + strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.938 kb on + strand, within ABIE40_RS23245 at 797.938 kb on + strand, within ABIE40_RS23245 at 797.938 kb on + strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.203 kb on + strand, within ABIE40_RS23245 at 798.203 kb on + strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.227 kb on + strand, within ABIE40_RS23245 at 798.227 kb on + strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.277 kb on + strand, within ABIE40_RS23245 at 798.411 kb on + strand at 798.487 kb on + strand at 798.488 kb on - strand at 798.576 kb on + strand at 798.577 kb on - strand at 798.706 kb on + strand, within ABIE40_RS23250 at 798.706 kb on + strand, within ABIE40_RS23250 at 798.706 kb on + strand, within ABIE40_RS23250 at 798.706 kb on + strand, within ABIE40_RS23250 at 798.706 kb on + strand, within ABIE40_RS23250 at 798.706 kb on + strand, within ABIE40_RS23250 at 798.707 kb on - strand, within ABIE40_RS23250 at 798.707 kb on - strand, within ABIE40_RS23250 at 798.707 kb on - strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.708 kb on + strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.709 kb on - strand, within ABIE40_RS23250 at 798.769 kb on + strand, within ABIE40_RS23250 at 798.769 kb on + strand, within ABIE40_RS23250 at 798.769 kb on + strand, within ABIE40_RS23250 at 798.832 kb on + strand, within ABIE40_RS23250 at 798.832 kb on + strand, within ABIE40_RS23250 at 798.832 kb on + strand, within ABIE40_RS23250 at 798.833 kb on - strand, within ABIE40_RS23250 at 798.833 kb on - strand, within ABIE40_RS23250 at 798.833 kb on - strand, within ABIE40_RS23250 at 798.838 kb on + strand, within ABIE40_RS23250 at 798.838 kb on + strand, within ABIE40_RS23250 at 798.838 kb on + strand, within ABIE40_RS23250 at 798.838 kb on + strand, within ABIE40_RS23250 at 798.838 kb on + strand, within ABIE40_RS23250 at 798.839 kb on - strand, within ABIE40_RS23250 at 798.839 kb on - strand, within ABIE40_RS23250 at 798.898 kb on - strand, within ABIE40_RS23250 at 798.898 kb on - strand, within ABIE40_RS23250 at 799.015 kb on + strand, within ABIE40_RS23250 at 799.016 kb on - strand, within ABIE40_RS23250 at 799.027 kb on + strand, within ABIE40_RS23250 at 799.027 kb on + strand, within ABIE40_RS23250 at 799.028 kb on - strand, within ABIE40_RS23250 at 799.144 kb on + strand, within ABIE40_RS23250 at 799.404 kb on + strand at 799.425 kb on + strand at 799.426 kb on - strand at 799.456 kb on - strand at 799.499 kb on + strand at 799.499 kb on + strand at 799.499 kb on + strand at 799.499 kb on + strand at 799.499 kb on + strand at 799.500 kb on - strand at 799.500 kb on - strand at 799.609 kb on + strand, within ABIE40_RS23255 at 799.609 kb on + strand, within ABIE40_RS23255 at 799.609 kb on + strand, within ABIE40_RS23255 at 799.610 kb on - strand, within ABIE40_RS23255 at 799.610 kb on - strand, within ABIE40_RS23255 at 799.610 kb on - strand, within ABIE40_RS23255 at 799.610 kb on - strand, within ABIE40_RS23255 at 799.613 kb on + strand, within ABIE40_RS23255 at 799.614 kb on - strand, within ABIE40_RS23255 at 799.614 kb on - strand, within ABIE40_RS23255 at 799.614 kb on - strand, within ABIE40_RS23255 at 799.614 kb on - strand, within ABIE40_RS23255 at 799.874 kb on + strand, within ABIE40_RS23255 at 799.874 kb on + strand, within ABIE40_RS23255 at 799.991 kb on + strand, within ABIE40_RS23255 at 799.991 kb on + strand, within ABIE40_RS23255 at 799.992 kb on - strand, within ABIE40_RS23255 at 799.992 kb on - strand, within ABIE40_RS23255 at 799.992 kb on - strand, within ABIE40_RS23255 at 799.992 kb on - strand, within ABIE40_RS23255 at 800.317 kb on + strand, within ABIE40_RS23255 at 800.317 kb on + strand, within ABIE40_RS23255 at 800.317 kb on + strand, within ABIE40_RS23255 at 800.318 kb on - strand, within ABIE40_RS23255 at 800.318 kb on - strand, within ABIE40_RS23255 at 800.318 kb on - strand, within ABIE40_RS23255 at 800.318 kb on - strand, within ABIE40_RS23255 at 800.318 kb on - strand, within ABIE40_RS23255 at 800.318 kb on - strand, within ABIE40_RS23255 at 800.341 kb on + strand, within ABIE40_RS23255
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 797,745 + +0.1 797,746 - +2.5 797,746 - -0.9 797,746 - -2.0 797,746 - -0.7 797,746 - -0.7 797,746 - -1.7 797,746 - +0.6 797,746 - +1.2 797,746 - -2.0 797,938 + ABIE40_RS23245 0.26 +0.6 797,938 + ABIE40_RS23245 0.26 -0.3 797,938 + ABIE40_RS23245 0.26 -0.1 797,939 - ABIE40_RS23245 0.26 -0.9 797,939 - ABIE40_RS23245 0.26 -1.0 797,939 - ABIE40_RS23245 0.26 -0.2 797,939 - ABIE40_RS23245 0.26 +1.0 798,142 + ABIE40_RS23245 0.58 -0.1 798,142 + ABIE40_RS23245 0.58 -0.7 798,142 + ABIE40_RS23245 0.58 +1.0 798,142 + ABIE40_RS23245 0.58 -0.6 798,142 + ABIE40_RS23245 0.58 +0.1 798,142 + ABIE40_RS23245 0.58 -0.0 798,142 + ABIE40_RS23245 0.58 -0.9 798,143 - ABIE40_RS23245 0.58 +0.1 798,143 - ABIE40_RS23245 0.58 -0.3 798,143 - ABIE40_RS23245 0.58 +0.4 798,143 - ABIE40_RS23245 0.58 -0.8 798,143 - ABIE40_RS23245 0.58 +0.2 798,143 - ABIE40_RS23245 0.58 +0.3 798,203 + ABIE40_RS23245 0.67 -0.7 798,203 + ABIE40_RS23245 0.67 +1.5 798,204 - ABIE40_RS23245 0.67 -0.4 798,204 - ABIE40_RS23245 0.67 -0.1 798,204 - ABIE40_RS23245 0.67 -0.3 798,204 - ABIE40_RS23245 0.67 -0.9 798,227 + ABIE40_RS23245 0.71 +0.6 798,227 + ABIE40_RS23245 0.71 +2.3 798,228 - ABIE40_RS23245 0.71 +2.1 798,228 - ABIE40_RS23245 0.71 -0.0 798,228 - ABIE40_RS23245 0.71 -0.3 798,228 - ABIE40_RS23245 0.71 -2.3 798,277 + ABIE40_RS23245 0.79 +0.3 798,411 + -0.5 798,487 + -0.7 798,488 - -1.6 798,576 + -1.1 798,577 - -1.5 798,706 + ABIE40_RS23250 0.22 -2.4 798,706 + ABIE40_RS23250 0.22 -3.3 798,706 + ABIE40_RS23250 0.22 -1.6 798,706 + ABIE40_RS23250 0.22 -1.5 798,706 + ABIE40_RS23250 0.22 -0.7 798,706 + ABIE40_RS23250 0.22 -3.2 798,707 - ABIE40_RS23250 0.23 -2.5 798,707 - ABIE40_RS23250 0.23 -0.2 798,707 - ABIE40_RS23250 0.23 -1.5 798,708 + ABIE40_RS23250 0.23 -1.3 798,708 + ABIE40_RS23250 0.23 -1.2 798,708 + ABIE40_RS23250 0.23 -2.3 798,708 + ABIE40_RS23250 0.23 -2.4 798,708 + ABIE40_RS23250 0.23 -5.0 798,708 + ABIE40_RS23250 0.23 -1.2 798,708 + ABIE40_RS23250 0.23 -5.1 798,708 + ABIE40_RS23250 0.23 -2.6 798,708 + ABIE40_RS23250 0.23 -3.6 798,708 + ABIE40_RS23250 0.23 -2.9 798,709 - ABIE40_RS23250 0.23 -2.6 798,709 - ABIE40_RS23250 0.23 -0.5 798,709 - ABIE40_RS23250 0.23 -3.1 798,709 - ABIE40_RS23250 0.23 -1.2 798,709 - ABIE40_RS23250 0.23 -1.5 798,709 - ABIE40_RS23250 0.23 -1.2 798,709 - ABIE40_RS23250 0.23 -0.2 798,709 - ABIE40_RS23250 0.23 -1.9 798,769 + ABIE40_RS23250 0.29 +0.5 798,769 + ABIE40_RS23250 0.29 -3.5 798,769 + ABIE40_RS23250 0.29 -1.9 798,832 + ABIE40_RS23250 0.36 -3.7 798,832 + ABIE40_RS23250 0.36 -2.6 798,832 + ABIE40_RS23250 0.36 -1.1 798,833 - ABIE40_RS23250 0.37 -0.9 798,833 - ABIE40_RS23250 0.37 -3.2 798,833 - ABIE40_RS23250 0.37 -3.9 798,838 + ABIE40_RS23250 0.37 -1.5 798,838 + ABIE40_RS23250 0.37 -1.5 798,838 + ABIE40_RS23250 0.37 -3.4 798,838 + ABIE40_RS23250 0.37 +0.5 798,838 + ABIE40_RS23250 0.37 -3.1 798,839 - ABIE40_RS23250 0.37 -3.2 798,839 - ABIE40_RS23250 0.37 -2.7 798,898 - ABIE40_RS23250 0.44 -0.5 798,898 - ABIE40_RS23250 0.44 -3.1 799,015 + ABIE40_RS23250 0.57 -2.8 799,016 - ABIE40_RS23250 0.57 -2.7 799,027 + ABIE40_RS23250 0.58 -3.5 799,027 + ABIE40_RS23250 0.58 -0.5 799,028 - ABIE40_RS23250 0.58 -3.1 799,144 + ABIE40_RS23250 0.71 -2.6 799,404 + +1.5 799,425 + -0.3 799,426 - -0.6 799,456 - -0.8 799,499 + +1.5 799,499 + -0.0 799,499 + -1.5 799,499 + -1.3 799,499 + -0.8 799,500 - -0.5 799,500 - -0.3 799,609 + ABIE40_RS23255 0.14 -0.5 799,609 + ABIE40_RS23255 0.14 -0.6 799,609 + ABIE40_RS23255 0.14 +0.9 799,610 - ABIE40_RS23255 0.15 -1.1 799,610 - ABIE40_RS23255 0.15 -0.9 799,610 - ABIE40_RS23255 0.15 -0.8 799,610 - ABIE40_RS23255 0.15 -1.0 799,613 + ABIE40_RS23255 0.15 +0.3 799,614 - ABIE40_RS23255 0.15 -0.5 799,614 - ABIE40_RS23255 0.15 +1.0 799,614 - ABIE40_RS23255 0.15 -0.9 799,614 - ABIE40_RS23255 0.15 +0.1 799,874 + ABIE40_RS23255 0.42 -0.2 799,874 + ABIE40_RS23255 0.42 -0.5 799,991 + ABIE40_RS23255 0.54 -0.2 799,991 + ABIE40_RS23255 0.54 +1.9 799,992 - ABIE40_RS23255 0.54 -0.3 799,992 - ABIE40_RS23255 0.54 -0.8 799,992 - ABIE40_RS23255 0.54 -0.8 799,992 - ABIE40_RS23255 0.54 -0.6 800,317 + ABIE40_RS23255 0.87 -1.0 800,317 + ABIE40_RS23255 0.87 -0.9 800,317 + ABIE40_RS23255 0.87 -0.4 800,318 - ABIE40_RS23255 0.87 +0.3 800,318 - ABIE40_RS23255 0.87 +0.3 800,318 - ABIE40_RS23255 0.87 -0.1 800,318 - ABIE40_RS23255 0.87 -0.8 800,318 - ABIE40_RS23255 0.87 -0.8 800,318 - ABIE40_RS23255 0.87 -0.2 800,341 + ABIE40_RS23255 0.90 +0.3
Or see this region's nucleotide sequence