Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20895 and ABIE40_RS20900 are separated by 99 nucleotides ABIE40_RS20900 and ABIE40_RS20905 are separated by 47 nucleotides ABIE40_RS20905 and ABIE40_RS20910 are separated by 92 nucleotides ABIE40_RS20910 and ABIE40_RS20915 are separated by 71 nucleotides
ABIE40_RS20895: ABIE40_RS20895 - PLP-dependent aminotransferase family protein, at 293,264 to 294,643
_RS20895
ABIE40_RS20900: ABIE40_RS20900 - methylenetetrahydrofolate reductase, at 294,743 to 295,579
_RS20900
ABIE40_RS20905: ABIE40_RS20905 - IclR family transcriptional regulator, at 295,627 to 296,409
_RS20905
ABIE40_RS20910: ABIE40_RS20910 - hypothetical protein, at 296,502 to 297,038
_RS20910
ABIE40_RS20915: ABIE40_RS20915 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 297,110 to 297,895
_RS20915
Position (kb) 295
296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 294.643 kb on + strand at 294.643 kb on + strand at 294.643 kb on + strand at 294.644 kb on - strand at 294.644 kb on - strand at 294.648 kb on + strand at 294.649 kb on - strand at 294.649 kb on - strand at 294.649 kb on - strand at 294.725 kb on + strand at 294.726 kb on - strand at 294.773 kb on + strand at 294.774 kb on - strand at 294.853 kb on + strand, within ABIE40_RS20900 at 295.065 kb on - strand, within ABIE40_RS20900 at 295.101 kb on + strand, within ABIE40_RS20900 at 295.102 kb on - strand, within ABIE40_RS20900 at 295.247 kb on + strand, within ABIE40_RS20900 at 295.248 kb on - strand, within ABIE40_RS20900 at 295.502 kb on + strand at 295.502 kb on + strand at 295.571 kb on - strand at 295.571 kb on - strand at 295.571 kb on - strand at 295.842 kb on + strand, within ABIE40_RS20905 at 295.903 kb on - strand, within ABIE40_RS20905 at 296.068 kb on + strand, within ABIE40_RS20905 at 296.069 kb on - strand, within ABIE40_RS20905 at 296.073 kb on + strand, within ABIE40_RS20905 at 296.242 kb on + strand, within ABIE40_RS20905 at 296.243 kb on - strand, within ABIE40_RS20905 at 296.243 kb on - strand, within ABIE40_RS20905 at 296.299 kb on + strand, within ABIE40_RS20905 at 296.300 kb on - strand, within ABIE40_RS20905 at 296.332 kb on + strand at 296.457 kb on - strand at 296.643 kb on + strand, within ABIE40_RS20910 at 296.643 kb on + strand, within ABIE40_RS20910 at 296.644 kb on - strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.745 kb on + strand, within ABIE40_RS20910 at 296.746 kb on - strand, within ABIE40_RS20910 at 296.746 kb on - strand, within ABIE40_RS20910 at 296.746 kb on - strand, within ABIE40_RS20910 at 296.746 kb on - strand, within ABIE40_RS20910 at 296.746 kb on - strand, within ABIE40_RS20910 at 296.746 kb on - strand, within ABIE40_RS20910 at 296.789 kb on + strand, within ABIE40_RS20910 at 296.790 kb on - strand, within ABIE40_RS20910 at 296.883 kb on + strand, within ABIE40_RS20910 at 296.898 kb on + strand, within ABIE40_RS20910 at 296.898 kb on + strand, within ABIE40_RS20910 at 296.899 kb on - strand, within ABIE40_RS20910 at 296.899 kb on - strand, within ABIE40_RS20910 at 296.899 kb on - strand, within ABIE40_RS20910 at 296.899 kb on - strand, within ABIE40_RS20910 at 296.899 kb on - strand, within ABIE40_RS20910 at 296.899 kb on - strand, within ABIE40_RS20910 at 296.914 kb on - strand, within ABIE40_RS20910 at 296.980 kb on + strand, within ABIE40_RS20910 at 296.980 kb on + strand, within ABIE40_RS20910 at 296.981 kb on - strand, within ABIE40_RS20910 at 296.981 kb on - strand, within ABIE40_RS20910 at 296.981 kb on - strand, within ABIE40_RS20910 at 297.230 kb on + strand, within ABIE40_RS20915 at 297.230 kb on + strand, within ABIE40_RS20915 at 297.230 kb on + strand, within ABIE40_RS20915 at 297.231 kb on - strand, within ABIE40_RS20915 at 297.231 kb on - strand, within ABIE40_RS20915 at 297.231 kb on - strand, within ABIE40_RS20915 at 297.231 kb on - strand, within ABIE40_RS20915 at 297.350 kb on + strand, within ABIE40_RS20915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 294,643 + -0.0 294,643 + +0.9 294,643 + -1.2 294,644 - -0.0 294,644 - -0.1 294,648 + +0.4 294,649 - +1.9 294,649 - +0.7 294,649 - +0.2 294,725 + -1.0 294,726 - +0.4 294,773 + -0.0 294,774 - +0.8 294,853 + ABIE40_RS20900 0.13 -1.2 295,065 - ABIE40_RS20900 0.38 +0.2 295,101 + ABIE40_RS20900 0.43 +0.7 295,102 - ABIE40_RS20900 0.43 -0.4 295,247 + ABIE40_RS20900 0.60 -0.2 295,248 - ABIE40_RS20900 0.60 +0.1 295,502 + -0.6 295,502 + -0.9 295,571 - -0.9 295,571 - +0.5 295,571 - -2.0 295,842 + ABIE40_RS20905 0.27 -2.3 295,903 - ABIE40_RS20905 0.35 -2.3 296,068 + ABIE40_RS20905 0.56 -2.7 296,069 - ABIE40_RS20905 0.56 -2.8 296,073 + ABIE40_RS20905 0.57 -1.7 296,242 + ABIE40_RS20905 0.79 -2.7 296,243 - ABIE40_RS20905 0.79 -3.2 296,243 - ABIE40_RS20905 0.79 -3.4 296,299 + ABIE40_RS20905 0.86 -2.7 296,300 - ABIE40_RS20905 0.86 -2.4 296,332 + -1.3 296,457 - -0.9 296,643 + ABIE40_RS20910 0.26 +0.3 296,643 + ABIE40_RS20910 0.26 -0.2 296,644 - ABIE40_RS20910 0.26 +0.0 296,745 + ABIE40_RS20910 0.45 -1.4 296,745 + ABIE40_RS20910 0.45 +0.3 296,745 + ABIE40_RS20910 0.45 -0.1 296,745 + ABIE40_RS20910 0.45 -1.2 296,745 + ABIE40_RS20910 0.45 -0.5 296,745 + ABIE40_RS20910 0.45 +0.4 296,745 + ABIE40_RS20910 0.45 -0.2 296,745 + ABIE40_RS20910 0.45 -0.6 296,746 - ABIE40_RS20910 0.45 -0.9 296,746 - ABIE40_RS20910 0.45 -0.1 296,746 - ABIE40_RS20910 0.45 +0.8 296,746 - ABIE40_RS20910 0.45 +0.5 296,746 - ABIE40_RS20910 0.45 -0.6 296,746 - ABIE40_RS20910 0.45 -0.3 296,789 + ABIE40_RS20910 0.53 -0.7 296,790 - ABIE40_RS20910 0.54 +0.3 296,883 + ABIE40_RS20910 0.71 -0.5 296,898 + ABIE40_RS20910 0.74 +2.3 296,898 + ABIE40_RS20910 0.74 -1.2 296,899 - ABIE40_RS20910 0.74 +0.3 296,899 - ABIE40_RS20910 0.74 +0.6 296,899 - ABIE40_RS20910 0.74 -0.6 296,899 - ABIE40_RS20910 0.74 -0.0 296,899 - ABIE40_RS20910 0.74 +0.6 296,899 - ABIE40_RS20910 0.74 +0.7 296,914 - ABIE40_RS20910 0.77 -0.0 296,980 + ABIE40_RS20910 0.89 +0.6 296,980 + ABIE40_RS20910 0.89 +0.2 296,981 - ABIE40_RS20910 0.89 -0.1 296,981 - ABIE40_RS20910 0.89 -0.8 296,981 - ABIE40_RS20910 0.89 -0.3 297,230 + ABIE40_RS20915 0.15 -0.8 297,230 + ABIE40_RS20915 0.15 +0.3 297,230 + ABIE40_RS20915 0.15 -1.8 297,231 - ABIE40_RS20915 0.15 -0.4 297,231 - ABIE40_RS20915 0.15 -1.7 297,231 - ABIE40_RS20915 0.15 -0.1 297,231 - ABIE40_RS20915 0.15 -0.9 297,350 + ABIE40_RS20915 0.31 +0.6
Or see this region's nucleotide sequence