Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20825

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20820 and ABIE40_RS20825 are separated by 22 nucleotidesABIE40_RS20825 and ABIE40_RS20830 overlap by 4 nucleotides ABIE40_RS20820: ABIE40_RS20820 - hydroxyacid dehydrogenase, at 278,087 to 279,118 _RS20820 ABIE40_RS20825: ABIE40_RS20825 - DUF126 domain-containing protein, at 279,141 to 279,569 _RS20825 ABIE40_RS20830: ABIE40_RS20830 - aconitase X catalytic domain-containing protein, at 279,566 to 280,810 _RS20830 Position (kb) 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 278.311 kb on - strand, within ABIE40_RS20820at 278.311 kb on - strand, within ABIE40_RS20820at 278.311 kb on - strand, within ABIE40_RS20820at 278.848 kb on - strand, within ABIE40_RS20820at 278.949 kb on + strand, within ABIE40_RS20820at 278.949 kb on + strand, within ABIE40_RS20820at 278.950 kb on - strand, within ABIE40_RS20820at 278.950 kb on - strand, within ABIE40_RS20820at 278.990 kb on - strand, within ABIE40_RS20820at 279.018 kb on + strandat 279.019 kb on - strandat 279.019 kb on - strandat 279.019 kb on - strandat 279.019 kb on - strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.022 kb on + strandat 279.023 kb on - strandat 279.023 kb on - strandat 279.023 kb on - strandat 279.023 kb on - strandat 279.023 kb on - strandat 279.023 kb on - strandat 279.263 kb on - strand, within ABIE40_RS20825at 279.410 kb on + strand, within ABIE40_RS20825at 279.411 kb on - strand, within ABIE40_RS20825at 279.657 kb on + strandat 279.657 kb on + strandat 279.657 kb on + strandat 279.658 kb on - strandat 279.658 kb on - strandat 279.658 kb on - strandat 279.660 kb on + strandat 279.660 kb on + strandat 279.660 kb on + strandat 279.660 kb on + strandat 279.660 kb on + strandat 279.661 kb on - strandat 279.661 kb on - strandat 279.661 kb on - strandat 279.661 kb on - strandat 279.723 kb on + strand, within ABIE40_RS20830at 279.723 kb on + strand, within ABIE40_RS20830at 279.723 kb on + strand, within ABIE40_RS20830at 279.723 kb on + strand, within ABIE40_RS20830at 279.723 kb on + strand, within ABIE40_RS20830at 279.724 kb on - strand, within ABIE40_RS20830at 279.724 kb on - strand, within ABIE40_RS20830at 279.724 kb on - strand, within ABIE40_RS20830at 279.724 kb on - strand, within ABIE40_RS20830at 279.724 kb on - strand, within ABIE40_RS20830at 279.734 kb on - strand, within ABIE40_RS20830at 279.823 kb on + strand, within ABIE40_RS20830at 279.824 kb on - strand, within ABIE40_RS20830at 279.824 kb on - strand, within ABIE40_RS20830at 279.824 kb on - strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.825 kb on + strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 279.826 kb on - strand, within ABIE40_RS20830at 280.288 kb on - strand, within ABIE40_RS20830at 280.290 kb on + strand, within ABIE40_RS20830at 280.291 kb on - strand, within ABIE40_RS20830at 280.291 kb on - strand, within ABIE40_RS20830at 280.381 kb on + strand, within ABIE40_RS20830at 280.381 kb on + strand, within ABIE40_RS20830

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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278,311 - ABIE40_RS20820 0.22 -0.7
278,311 - ABIE40_RS20820 0.22 -0.2
278,311 - ABIE40_RS20820 0.22 +0.6
278,848 - ABIE40_RS20820 0.74 +0.1
278,949 + ABIE40_RS20820 0.84 +2.2
278,949 + ABIE40_RS20820 0.84 -0.5
278,950 - ABIE40_RS20820 0.84 +0.7
278,950 - ABIE40_RS20820 0.84 +0.3
278,990 - ABIE40_RS20820 0.88 -0.1
279,018 + -0.7
279,019 - +0.2
279,019 - -0.5
279,019 - +0.0
279,019 - -0.8
279,022 + -0.2
279,022 + +0.4
279,022 + +0.6
279,022 + +1.0
279,022 + -1.5
279,022 + +0.9
279,022 + -1.2
279,022 + +0.2
279,022 + +0.2
279,022 + +1.6
279,022 + +0.3
279,023 - -0.4
279,023 - -0.9
279,023 - +1.4
279,023 - +0.8
279,023 - -1.9
279,023 - +0.6
279,263 - ABIE40_RS20825 0.28 -3.1
279,410 + ABIE40_RS20825 0.63 -0.7
279,411 - ABIE40_RS20825 0.63 -1.1
279,657 + +0.7
279,657 + -0.1
279,657 + -1.2
279,658 - -0.5
279,658 - -2.1
279,658 - +0.4
279,660 + -0.1
279,660 + +0.2
279,660 + +0.1
279,660 + -0.6
279,660 + +1.6
279,661 - +0.0
279,661 - +0.3
279,661 - -0.7
279,661 - +0.1
279,723 + ABIE40_RS20830 0.13 -0.1
279,723 + ABIE40_RS20830 0.13 +0.3
279,723 + ABIE40_RS20830 0.13 -0.1
279,723 + ABIE40_RS20830 0.13 +2.3
279,723 + ABIE40_RS20830 0.13 -1.6
279,724 - ABIE40_RS20830 0.13 +1.4
279,724 - ABIE40_RS20830 0.13 +0.5
279,724 - ABIE40_RS20830 0.13 +0.3
279,724 - ABIE40_RS20830 0.13 +0.1
279,724 - ABIE40_RS20830 0.13 -0.6
279,734 - ABIE40_RS20830 0.13 +0.6
279,823 + ABIE40_RS20830 0.21 +1.0
279,824 - ABIE40_RS20830 0.21 -1.5
279,824 - ABIE40_RS20830 0.21 +0.2
279,824 - ABIE40_RS20830 0.21 +0.8
279,825 + ABIE40_RS20830 0.21 +0.3
279,825 + ABIE40_RS20830 0.21 +0.8
279,825 + ABIE40_RS20830 0.21 -0.3
279,825 + ABIE40_RS20830 0.21 -0.1
279,825 + ABIE40_RS20830 0.21 +0.0
279,825 + ABIE40_RS20830 0.21 -0.6
279,825 + ABIE40_RS20830 0.21 +0.5
279,825 + ABIE40_RS20830 0.21 -0.4
279,825 + ABIE40_RS20830 0.21 -0.7
279,825 + ABIE40_RS20830 0.21 -0.9
279,826 - ABIE40_RS20830 0.21 +0.3
279,826 - ABIE40_RS20830 0.21 +0.1
279,826 - ABIE40_RS20830 0.21 +1.1
279,826 - ABIE40_RS20830 0.21 -0.0
279,826 - ABIE40_RS20830 0.21 +0.4
279,826 - ABIE40_RS20830 0.21 +0.1
279,826 - ABIE40_RS20830 0.21 -0.5
279,826 - ABIE40_RS20830 0.21 -0.0
279,826 - ABIE40_RS20830 0.21 -1.4
280,288 - ABIE40_RS20830 0.58 -0.2
280,290 + ABIE40_RS20830 0.58 -0.1
280,291 - ABIE40_RS20830 0.58 -0.2
280,291 - ABIE40_RS20830 0.58 +0.3
280,381 + ABIE40_RS20830 0.65 +1.9
280,381 + ABIE40_RS20830 0.65 -0.1

Or see this region's nucleotide sequence