Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20690

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20685 and ABIE40_RS20690 are separated by 64 nucleotidesABIE40_RS20690 and ABIE40_RS20695 overlap by 4 nucleotidesABIE40_RS20695 and ABIE40_RS20700 are separated by 21 nucleotides ABIE40_RS20685: ABIE40_RS20685 - ABC transporter substrate-binding protein, at 246,044 to 247,552 _RS20685 ABIE40_RS20690: ABIE40_RS20690 - ABC transporter permease, at 247,617 to 248,564 _RS20690 ABIE40_RS20695: ABIE40_RS20695 - ABC transporter permease, at 248,561 to 249,436 _RS20695 ABIE40_RS20700: ABIE40_RS20700 - gamma-glutamyltransferase family protein, at 249,458 to 251,242 _RS20700 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2 3at 246.620 kb on - strand, within ABIE40_RS20685at 246.661 kb on + strand, within ABIE40_RS20685at 246.661 kb on + strand, within ABIE40_RS20685at 246.661 kb on + strand, within ABIE40_RS20685at 246.661 kb on + strand, within ABIE40_RS20685at 246.661 kb on + strand, within ABIE40_RS20685at 246.661 kb on + strand, within ABIE40_RS20685at 246.661 kb on + strand, within ABIE40_RS20685at 246.662 kb on - strand, within ABIE40_RS20685at 246.662 kb on - strand, within ABIE40_RS20685at 246.662 kb on - strand, within ABIE40_RS20685at 246.662 kb on - strand, within ABIE40_RS20685at 246.662 kb on - strand, within ABIE40_RS20685at 246.683 kb on + strand, within ABIE40_RS20685at 246.827 kb on + strand, within ABIE40_RS20685at 246.827 kb on + strand, within ABIE40_RS20685at 246.828 kb on - strand, within ABIE40_RS20685at 246.839 kb on + strand, within ABIE40_RS20685at 246.840 kb on - strand, within ABIE40_RS20685at 246.840 kb on - strand, within ABIE40_RS20685at 246.950 kb on + strand, within ABIE40_RS20685at 246.950 kb on + strand, within ABIE40_RS20685at 246.951 kb on - strand, within ABIE40_RS20685at 247.229 kb on + strand, within ABIE40_RS20685at 247.229 kb on + strand, within ABIE40_RS20685at 247.229 kb on + strand, within ABIE40_RS20685at 247.230 kb on - strand, within ABIE40_RS20685at 247.230 kb on - strand, within ABIE40_RS20685at 247.230 kb on - strand, within ABIE40_RS20685at 247.325 kb on + strand, within ABIE40_RS20685at 247.325 kb on + strand, within ABIE40_RS20685at 247.325 kb on + strand, within ABIE40_RS20685at 247.325 kb on + strand, within ABIE40_RS20685at 247.326 kb on - strand, within ABIE40_RS20685at 247.326 kb on - strand, within ABIE40_RS20685at 247.445 kb on + strandat 247.445 kb on + strandat 247.445 kb on + strandat 247.446 kb on - strandat 247.446 kb on - strandat 247.446 kb on - strandat 247.446 kb on - strandat 247.456 kb on + strandat 247.457 kb on - strandat 247.557 kb on - strandat 247.557 kb on - strandat 247.557 kb on - strandat 247.620 kb on + strandat 247.620 kb on + strandat 247.620 kb on + strandat 247.620 kb on + strandat 247.620 kb on + strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.621 kb on - strandat 247.626 kb on + strandat 247.626 kb on + strandat 247.626 kb on + strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.627 kb on - strandat 247.673 kb on - strandat 247.673 kb on - strandat 247.765 kb on - strand, within ABIE40_RS20690at 247.780 kb on - strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.809 kb on + strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.810 kb on - strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.850 kb on + strand, within ABIE40_RS20690at 247.851 kb on - strand, within ABIE40_RS20690at 247.926 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.991 kb on + strand, within ABIE40_RS20690at 247.992 kb on - strand, within ABIE40_RS20690at 247.992 kb on - strand, within ABIE40_RS20690at 247.992 kb on - strand, within ABIE40_RS20690at 248.004 kb on + strand, within ABIE40_RS20690at 248.004 kb on + strand, within ABIE40_RS20690at 248.250 kb on + strand, within ABIE40_RS20690at 248.250 kb on + strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.251 kb on - strand, within ABIE40_RS20690at 248.452 kb on - strand, within ABIE40_RS20690at 248.452 kb on - strand, within ABIE40_RS20690at 248.560 kb on + strandat 248.604 kb on + strandat 248.605 kb on - strandat 248.605 kb on - strandat 248.801 kb on - strand, within ABIE40_RS20695at 248.886 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.110 kb on + strand, within ABIE40_RS20695at 249.111 kb on - strand, within ABIE40_RS20695at 249.111 kb on - strand, within ABIE40_RS20695at 249.111 kb on - strand, within ABIE40_RS20695at 249.164 kb on + strand, within ABIE40_RS20695at 249.165 kb on - strand, within ABIE40_RS20695at 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.452 kb on + strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strandat 249.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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246,620 - ABIE40_RS20685 0.38 +0.1
246,661 + ABIE40_RS20685 0.41 +0.1
246,661 + ABIE40_RS20685 0.41 -1.4
246,661 + ABIE40_RS20685 0.41 +0.2
246,661 + ABIE40_RS20685 0.41 -1.0
246,661 + ABIE40_RS20685 0.41 -0.3
246,661 + ABIE40_RS20685 0.41 -0.6
246,661 + ABIE40_RS20685 0.41 -0.4
246,662 - ABIE40_RS20685 0.41 +1.1
246,662 - ABIE40_RS20685 0.41 -0.6
246,662 - ABIE40_RS20685 0.41 -0.5
246,662 - ABIE40_RS20685 0.41 -0.4
246,662 - ABIE40_RS20685 0.41 +0.9
246,683 + ABIE40_RS20685 0.42 -0.4
246,827 + ABIE40_RS20685 0.52 +1.0
246,827 + ABIE40_RS20685 0.52 +0.0
246,828 - ABIE40_RS20685 0.52 -0.2
246,839 + ABIE40_RS20685 0.53 -0.3
246,840 - ABIE40_RS20685 0.53 +0.8
246,840 - ABIE40_RS20685 0.53 +1.7
246,950 + ABIE40_RS20685 0.60 +1.6
246,950 + ABIE40_RS20685 0.60 -0.7
246,951 - ABIE40_RS20685 0.60 +0.8
247,229 + ABIE40_RS20685 0.79 -0.6
247,229 + ABIE40_RS20685 0.79 -1.4
247,229 + ABIE40_RS20685 0.79 +0.2
247,230 - ABIE40_RS20685 0.79 -2.1
247,230 - ABIE40_RS20685 0.79 +0.7
247,230 - ABIE40_RS20685 0.79 +1.0
247,325 + ABIE40_RS20685 0.85 +1.5
247,325 + ABIE40_RS20685 0.85 -0.1
247,325 + ABIE40_RS20685 0.85 -0.2
247,325 + ABIE40_RS20685 0.85 -0.1
247,326 - ABIE40_RS20685 0.85 +0.3
247,326 - ABIE40_RS20685 0.85 -0.4
247,445 + -0.2
247,445 + +0.1
247,445 + -0.1
247,446 - -0.6
247,446 - -0.6
247,446 - -0.8
247,446 - +0.2
247,456 + +3.3
247,457 - +0.1
247,557 - +0.6
247,557 - +1.3
247,557 - +1.1
247,620 + -2.3
247,620 + -0.3
247,620 + -0.8
247,620 + -1.0
247,620 + +0.8
247,621 - -0.6
247,621 - -0.5
247,621 - -0.3
247,621 - -2.2
247,621 - +0.0
247,621 - -0.7
247,621 - -1.1
247,621 - -0.2
247,621 - -0.1
247,621 - +0.1
247,621 - -0.1
247,621 - +1.3
247,621 - +0.2
247,621 - -1.7
247,621 - +0.0
247,621 - +0.0
247,621 - +0.3
247,621 - +1.8
247,621 - -1.3
247,626 + +0.1
247,626 + +0.5
247,626 + +0.2
247,627 - +0.1
247,627 - -0.2
247,627 - -0.1
247,627 - +0.4
247,627 - +0.9
247,627 - -0.6
247,673 - -0.8
247,673 - +1.3
247,765 - ABIE40_RS20690 0.16 -0.7
247,780 - ABIE40_RS20690 0.17 -1.3
247,809 + ABIE40_RS20690 0.20 -1.0
247,809 + ABIE40_RS20690 0.20 -2.0
247,809 + ABIE40_RS20690 0.20 -0.4
247,809 + ABIE40_RS20690 0.20 +0.6
247,810 - ABIE40_RS20690 0.20 +0.5
247,810 - ABIE40_RS20690 0.20 -0.3
247,810 - ABIE40_RS20690 0.20 +0.1
247,810 - ABIE40_RS20690 0.20 -0.1
247,810 - ABIE40_RS20690 0.20 +0.2
247,810 - ABIE40_RS20690 0.20 +2.5
247,850 + ABIE40_RS20690 0.25 -2.6
247,850 + ABIE40_RS20690 0.25 -1.9
247,850 + ABIE40_RS20690 0.25 +0.6
247,850 + ABIE40_RS20690 0.25 -0.8
247,851 - ABIE40_RS20690 0.25 -0.8
247,926 + ABIE40_RS20690 0.33 +0.4
247,991 + ABIE40_RS20690 0.39 +0.7
247,991 + ABIE40_RS20690 0.39 -0.5
247,991 + ABIE40_RS20690 0.39 -1.4
247,991 + ABIE40_RS20690 0.39 +2.3
247,991 + ABIE40_RS20690 0.39 +0.8
247,991 + ABIE40_RS20690 0.39 -0.8
247,992 - ABIE40_RS20690 0.40 +0.2
247,992 - ABIE40_RS20690 0.40 +0.0
247,992 - ABIE40_RS20690 0.40 +2.3
248,004 + ABIE40_RS20690 0.41 -0.1
248,004 + ABIE40_RS20690 0.41 +0.3
248,250 + ABIE40_RS20690 0.67 -0.3
248,250 + ABIE40_RS20690 0.67 -0.8
248,251 - ABIE40_RS20690 0.67 -0.1
248,251 - ABIE40_RS20690 0.67 +0.1
248,251 - ABIE40_RS20690 0.67 +0.3
248,251 - ABIE40_RS20690 0.67 +0.3
248,251 - ABIE40_RS20690 0.67 -2.0
248,452 - ABIE40_RS20690 0.88 +1.9
248,452 - ABIE40_RS20690 0.88 +0.4
248,560 + -1.8
248,604 + -1.6
248,605 - +0.1
248,605 - +0.8
248,801 - ABIE40_RS20695 0.27 +0.6
248,886 + ABIE40_RS20695 0.37 -0.8
249,110 + ABIE40_RS20695 0.63 +0.0
249,110 + ABIE40_RS20695 0.63 +0.1
249,110 + ABIE40_RS20695 0.63 +1.5
249,110 + ABIE40_RS20695 0.63 +1.0
249,110 + ABIE40_RS20695 0.63 +1.3
249,110 + ABIE40_RS20695 0.63 -0.6
249,111 - ABIE40_RS20695 0.63 -0.1
249,111 - ABIE40_RS20695 0.63 -1.5
249,111 - ABIE40_RS20695 0.63 -1.3
249,164 + ABIE40_RS20695 0.69 +0.5
249,165 - ABIE40_RS20695 0.69 +1.2
249,452 + -0.1
249,452 + +1.2
249,452 + -0.3
249,452 + -0.5
249,452 + -1.0
249,452 + -0.8
249,453 - +0.1
249,453 - +0.9
249,453 - -0.8
249,453 - -0.4
249,453 - +0.7
249,453 - -1.8
249,453 - +3.1
249,453 - +1.2

Or see this region's nucleotide sequence