Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20450 and ABIE40_RS20455 overlap by 4 nucleotides ABIE40_RS20455 and ABIE40_RS20460 are separated by 2 nucleotides ABIE40_RS20460 and ABIE40_RS20465 are separated by 41 nucleotides ABIE40_RS20465 and ABIE40_RS20470 are separated by 14 nucleotides
ABIE40_RS20450: ABIE40_RS20450 - precorrin-2 C(20)-methyltransferase, at 193,929 to 194,660
_RS20450
ABIE40_RS20455: ABIE40_RS20455 - precorrin-8X methylmutase, at 194,657 to 195,289
_RS20455
ABIE40_RS20460: ABIE40_RS20460 - precorrin-3B synthase, at 195,292 to 196,656
_RS20460
ABIE40_RS20465: ABIE40_RS20465 - precorrin-6A synthase (deacetylating), at 196,698 to 197,456
_RS20465
ABIE40_RS20470: ABIE40_RS20470 - DUF2938 domain-containing protein, at 197,471 to 197,950
_RS20470
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 194.312 kb on - strand, within ABIE40_RS20450 at 194.312 kb on - strand, within ABIE40_RS20450 at 194.312 kb on - strand, within ABIE40_RS20450 at 194.320 kb on + strand, within ABIE40_RS20450 at 194.357 kb on + strand, within ABIE40_RS20450 at 194.358 kb on - strand, within ABIE40_RS20450 at 194.405 kb on - strand, within ABIE40_RS20450 at 194.661 kb on - strand at 194.661 kb on - strand at 194.661 kb on - strand at 194.661 kb on - strand at 194.860 kb on - strand, within ABIE40_RS20455 at 194.948 kb on - strand, within ABIE40_RS20455 at 194.948 kb on - strand, within ABIE40_RS20455 at 195.249 kb on + strand at 195.250 kb on - strand at 195.273 kb on + strand at 195.273 kb on + strand at 195.274 kb on - strand at 195.279 kb on + strand at 195.293 kb on + strand at 195.294 kb on - strand at 195.623 kb on + strand, within ABIE40_RS20460 at 195.667 kb on - strand, within ABIE40_RS20460 at 196.112 kb on - strand, within ABIE40_RS20460 at 196.112 kb on - strand, within ABIE40_RS20460 at 196.143 kb on + strand, within ABIE40_RS20460 at 196.667 kb on + strand at 196.668 kb on - strand at 196.668 kb on - strand at 196.699 kb on + strand at 196.700 kb on - strand at 196.732 kb on + strand at 196.732 kb on + strand at 196.733 kb on - strand at 196.733 kb on - strand at 196.733 kb on - strand at 196.736 kb on + strand at 196.736 kb on + strand at 196.737 kb on - strand at 196.737 kb on - strand at 196.739 kb on - strand at 196.847 kb on - strand, within ABIE40_RS20465 at 196.847 kb on - strand, within ABIE40_RS20465 at 197.036 kb on + strand, within ABIE40_RS20465 at 197.111 kb on - strand, within ABIE40_RS20465 at 197.182 kb on + strand, within ABIE40_RS20465 at 197.182 kb on + strand, within ABIE40_RS20465 at 197.183 kb on - strand, within ABIE40_RS20465 at 197.226 kb on - strand, within ABIE40_RS20465 at 197.227 kb on + strand, within ABIE40_RS20465 at 197.227 kb on + strand, within ABIE40_RS20465 at 197.227 kb on + strand, within ABIE40_RS20465 at 197.228 kb on - strand, within ABIE40_RS20465 at 197.228 kb on - strand, within ABIE40_RS20465 at 197.296 kb on + strand, within ABIE40_RS20465 at 197.519 kb on - strand, within ABIE40_RS20470 at 197.519 kb on - strand, within ABIE40_RS20470
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 194,312 - ABIE40_RS20450 0.52 -3.5 194,312 - ABIE40_RS20450 0.52 -1.9 194,312 - ABIE40_RS20450 0.52 -2.2 194,320 + ABIE40_RS20450 0.53 -0.9 194,357 + ABIE40_RS20450 0.58 -0.5 194,358 - ABIE40_RS20450 0.59 -1.7 194,405 - ABIE40_RS20450 0.65 -1.5 194,661 - -0.3 194,661 - +1.4 194,661 - +1.7 194,661 - -1.0 194,860 - ABIE40_RS20455 0.32 -1.1 194,948 - ABIE40_RS20455 0.46 -2.9 194,948 - ABIE40_RS20455 0.46 -0.5 195,249 + -1.3 195,250 - -2.2 195,273 + -0.0 195,273 + -0.5 195,274 - -1.1 195,279 + -0.3 195,293 + -0.1 195,294 - -0.9 195,623 + ABIE40_RS20460 0.24 -2.7 195,667 - ABIE40_RS20460 0.27 -2.4 196,112 - ABIE40_RS20460 0.60 -1.1 196,112 - ABIE40_RS20460 0.60 -2.1 196,143 + ABIE40_RS20460 0.62 -1.8 196,667 + -0.3 196,668 - -0.5 196,668 - -0.6 196,699 + -0.3 196,700 - -0.1 196,732 + -2.4 196,732 + -1.1 196,733 - +0.3 196,733 - -0.3 196,733 - -2.2 196,736 + -2.3 196,736 + -0.9 196,737 - +0.7 196,737 - -2.1 196,739 - -1.5 196,847 - ABIE40_RS20465 0.20 +2.3 196,847 - ABIE40_RS20465 0.20 -0.5 197,036 + ABIE40_RS20465 0.45 -0.5 197,111 - ABIE40_RS20465 0.54 -2.1 197,182 + ABIE40_RS20465 0.64 -2.4 197,182 + ABIE40_RS20465 0.64 -1.4 197,183 - ABIE40_RS20465 0.64 -1.3 197,226 - ABIE40_RS20465 0.70 -2.7 197,227 + ABIE40_RS20465 0.70 -0.3 197,227 + ABIE40_RS20465 0.70 -0.9 197,227 + ABIE40_RS20465 0.70 +0.3 197,228 - ABIE40_RS20465 0.70 -1.8 197,228 - ABIE40_RS20465 0.70 -3.3 197,296 + ABIE40_RS20465 0.79 -1.0 197,519 - ABIE40_RS20470 0.10 -0.2 197,519 - ABIE40_RS20470 0.10 -0.5
Or see this region's nucleotide sequence