Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS15550 and ABIE40_RS15555 are separated by 87 nucleotides ABIE40_RS15555 and ABIE40_RS15560 are separated by 70 nucleotides ABIE40_RS15560 and ABIE40_RS15565 are separated by 85 nucleotides
ABIE40_RS15550: ABIE40_RS15550 - heavy metal translocating P-type ATPase, at 3,082,240 to 3,084,453
_RS15550
ABIE40_RS15555: ABIE40_RS15555 - YidB family protein, at 3,084,541 to 3,085,125
_RS15555
ABIE40_RS15560: ABIE40_RS15560 - phosphoglycerate dehydrogenase, at 3,085,196 to 3,086,791
_RS15560
ABIE40_RS15565: ABIE40_RS15565 - phosphoserine transaminase, at 3,086,877 to 3,088,058
_RS15565
Position (kb)
3085
3086
3087 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3084.327 kb on - strand at 3084.327 kb on - strand at 3084.413 kb on + strand at 3084.558 kb on + strand at 3084.559 kb on - strand at 3084.559 kb on - strand at 3085.291 kb on - strand at 3085.394 kb on - strand, within ABIE40_RS15560 at 3085.394 kb on - strand, within ABIE40_RS15560 at 3085.394 kb on - strand, within ABIE40_RS15560 at 3085.419 kb on + strand, within ABIE40_RS15560 at 3085.420 kb on - strand, within ABIE40_RS15560 at 3085.420 kb on - strand, within ABIE40_RS15560 at 3085.420 kb on - strand, within ABIE40_RS15560 at 3086.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 3,084,327 - -0.2 3,084,327 - -0.4 3,084,413 + +1.2 3,084,558 + +2.1 3,084,559 - -0.7 3,084,559 - +1.2 3,085,291 - -1.0 3,085,394 - ABIE40_RS15560 0.12 -1.9 3,085,394 - ABIE40_RS15560 0.12 -0.4 3,085,394 - ABIE40_RS15560 0.12 -1.9 3,085,419 + ABIE40_RS15560 0.14 -2.0 3,085,420 - ABIE40_RS15560 0.14 -1.4 3,085,420 - ABIE40_RS15560 0.14 -2.3 3,085,420 - ABIE40_RS15560 0.14 -0.7 3,086,901 - -1.4
Or see this region's nucleotide sequence