Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS14715

Experiment: D-Serine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (C)
2,882,331	+		ABIE40_RS14710	0.36	-3.5
2,882,331	+		ABIE40_RS14710	0.36	-2.0
2,882,331	+		ABIE40_RS14710	0.36	+0.6
2,882,332	-		ABIE40_RS14710	0.36	-4.7
2,882,332	-		ABIE40_RS14710	0.36	-2.8
2,882,332	-		ABIE40_RS14710	0.36	-0.4
2,882,332	-		ABIE40_RS14710	0.36	-0.4
2,882,332	-		ABIE40_RS14710	0.36	-1.6
2,882,364	+		ABIE40_RS14710	0.39	-1.8
2,882,365	-		ABIE40_RS14710	0.39	-1.0
2,882,365	-		ABIE40_RS14710	0.39	-2.4
2,882,365	-		ABIE40_RS14710	0.39	-0.2
2,882,365	-		ABIE40_RS14710	0.39	-1.6
2,882,382	+		ABIE40_RS14710	0.40	+0.0
2,882,383	-		ABIE40_RS14710	0.40	-3.8
2,882,383	-		ABIE40_RS14710	0.40	-2.7
2,882,383	-		ABIE40_RS14710	0.40	-1.6
2,882,385	+		ABIE40_RS14710	0.40	-1.3
2,882,473	+		ABIE40_RS14710	0.46	-1.4
2,882,482	+		ABIE40_RS14710	0.47	-2.7
2,882,491	+		ABIE40_RS14710	0.48	-3.1
2,882,491	+		ABIE40_RS14710	0.48	-3.0
2,882,492	-		ABIE40_RS14710	0.48	-0.5
2,882,492	-		ABIE40_RS14710	0.48	-2.2
2,882,492	-		ABIE40_RS14710	0.48	-0.4
2,882,492	-		ABIE40_RS14710	0.48	-3.5
2,882,568	+		ABIE40_RS14710	0.53	+0.3
2,882,670	+		ABIE40_RS14710	0.61	-1.0
2,882,671	-		ABIE40_RS14710	0.61	-2.4
2,882,688	+		ABIE40_RS14710	0.62	-4.3
2,882,689	-		ABIE40_RS14710	0.62	-1.5
2,882,709	+		ABIE40_RS14710	0.63	-0.1
2,882,721	+		ABIE40_RS14710	0.64	-2.2
2,882,722	-		ABIE40_RS14710	0.64	-2.8
2,882,784	+		ABIE40_RS14710	0.69	-2.2
2,882,784	+		ABIE40_RS14710	0.69	-2.5
2,882,784	+		ABIE40_RS14710	0.69	-3.9
2,882,784	+		ABIE40_RS14710	0.69	+0.0
2,882,784	+		ABIE40_RS14710	0.69	-1.5
2,882,785	-		ABIE40_RS14710	0.69	-1.0
2,882,785	-		ABIE40_RS14710	0.69	-1.6
2,882,785	-		ABIE40_RS14710	0.69	-2.7
2,882,850	+		ABIE40_RS14710	0.74	-1.8
2,882,850	+		ABIE40_RS14710	0.74	-1.4
2,882,850	+		ABIE40_RS14710	0.74	-2.1
2,882,850	+		ABIE40_RS14710	0.74	-0.6
2,882,850	+		ABIE40_RS14710	0.74	-2.0
2,882,850	+		ABIE40_RS14710	0.74	-2.6
2,882,850	+		ABIE40_RS14710	0.74	-2.7
2,882,851	-		ABIE40_RS14710	0.74	-2.5
2,882,851	-		ABIE40_RS14710	0.74	-2.1
2,882,851	-		ABIE40_RS14710	0.74	-2.2
2,882,851	-		ABIE40_RS14710	0.74	-2.8
2,882,851	-		ABIE40_RS14710	0.74	-1.6
2,882,852	-		ABIE40_RS14710	0.74	+1.6
2,882,865	+		ABIE40_RS14710	0.75	-3.3
2,882,933	-		ABIE40_RS14710	0.80	-2.9
2,883,077	-		ABIE40_RS14710	0.90	-2.4
2,883,108	+				-1.8
2,883,108	+				-3.4
2,883,109	-				-3.6
2,883,109	-				-3.1
2,883,109	-				-4.2
2,883,109	-				+0.0
2,883,160	+				-2.9
2,883,224	+				-1.7
2,883,224	+				-3.5
2,883,224	+				-2.2
2,883,225	-				-2.0
2,883,225	-				-3.8
2,883,226	+				-2.5
2,883,226	+				-3.5
2,883,226	+				-3.1
2,883,226	+				-2.7
2,883,226	+				-2.7
2,883,226	+				-4.0
2,883,226	+				-2.5
2,883,227	-				-2.5
2,883,227	-				-3.0
2,883,314	+		ABIE40_RS14715	0.10	-1.0
2,883,314	+		ABIE40_RS14715	0.10	-1.2
2,883,315	-		ABIE40_RS14715	0.10	-0.6
2,883,315	-		ABIE40_RS14715	0.10	-2.7
2,883,329	+		ABIE40_RS14715	0.12	-2.7
2,883,330	-		ABIE40_RS14715	0.12	-2.9
2,883,470	+		ABIE40_RS14715	0.27	-2.0
2,883,471	-		ABIE40_RS14715	0.27	+0.5
2,883,473	+		ABIE40_RS14715	0.28	+0.1
2,883,473	+		ABIE40_RS14715	0.28	-2.8
2,883,473	+		ABIE40_RS14715	0.28	-1.2
2,883,473	+		ABIE40_RS14715	0.28	-0.9
2,883,473	+		ABIE40_RS14715	0.28	-2.3
2,883,474	-		ABIE40_RS14715	0.28	-3.0
2,883,474	-		ABIE40_RS14715	0.28	+1.6
2,883,474	-		ABIE40_RS14715	0.28	-2.4
2,883,474	-		ABIE40_RS14715	0.28	-3.8
2,883,474	-		ABIE40_RS14715	0.28	-2.4
2,883,474	-		ABIE40_RS14715	0.28	-2.1
2,883,489	+		ABIE40_RS14715	0.29	-2.8
2,883,619	-		ABIE40_RS14715	0.44	-1.1
2,883,632	+		ABIE40_RS14715	0.45	-2.8
2,883,632	+		ABIE40_RS14715	0.45	-3.2
2,883,633	-		ABIE40_RS14715	0.45	-1.0
2,883,633	-		ABIE40_RS14715	0.45	-3.9
2,883,709	-		ABIE40_RS14715	0.54	-2.7
2,883,712	-		ABIE40_RS14715	0.54	-3.2
2,883,712	-		ABIE40_RS14715	0.54	-1.7
2,883,712	-		ABIE40_RS14715	0.54	-1.7
2,883,713	+		ABIE40_RS14715	0.54	-3.2
2,883,713	+		ABIE40_RS14715	0.54	-1.7
2,883,713	+		ABIE40_RS14715	0.54	-0.7
2,883,714	-		ABIE40_RS14715	0.54	-3.6
2,883,725	-		ABIE40_RS14715	0.56	-1.7
2,883,849	-		ABIE40_RS14715	0.69	-0.7
2,883,849	-		ABIE40_RS14715	0.69	-2.4
2,883,928	+		ABIE40_RS14715	0.78	-0.7
2,884,040	+				-0.4
2,884,050	+				-4.8
2,884,050	+				-1.4
2,884,050	+				-3.0
2,884,051	-				-2.4
2,884,051	-				-1.4
2,884,051	-				-2.2
2,884,051	-				-1.8
2,884,051	-				-1.4
2,884,052	+				-1.2
2,884,053	-				-2.8
2,884,073	+				-1.5
2,884,073	+				-2.5
2,884,074	-				-2.6
2,884,074	-				-3.1
2,884,074	-				-0.5
2,884,114	-				-2.0
2,884,118	+				-2.5
2,884,118	+				-2.5
2,884,118	+				-1.6
2,884,118	+				-5.0
2,884,119	-				-3.0
2,884,119	-				-0.7
2,884,119	-				-2.3
2,884,125	+				-1.5
2,884,125	+				-2.0
2,884,125	+				-2.0
2,884,125	+				-1.1
2,884,125	+				-1.8
2,884,125	+				-2.4
2,884,125	+				-2.8
2,884,126	-				-2.5
2,884,126	-				-1.3
2,884,126	-				-3.4
2,884,126	-				-2.0
2,884,126	-				+0.2
2,884,126	-				-2.7
2,884,126	-				-2.5
2,884,126	-				-2.4
2,884,189	+				-1.0
2,884,216	+				-1.0
2,884,217	-				+1.6
2,884,283	+				-1.8
2,884,283	+				-1.3
2,884,325	+				+1.1
2,884,325	+				-0.5
2,884,326	-				-1.8
2,884,327	+				-0.4
2,884,327	+				+0.1
2,884,328	-				-0.8
2,884,328	-				-2.6
2,884,453	-				-0.4
2,884,474	+				-0.1
2,884,475	-				+0.1
2,884,549	+				+0.2
2,884,551	+				-0.7
2,884,551	+				+0.1
2,884,551	+				-2.0
2,884,551	+				+0.3
2,884,551	+				+0.1
2,884,552	-				-1.2
2,884,552	-				-0.2
2,884,552	-				-0.9
2,884,552	-				-3.0
2,884,552	-				+3.9
2,884,605	+				-0.6
2,884,656	+				+0.2
2,884,657	-				-1.5
2,884,901	-		ABIE40_RS14720	0.38	-1.0
2,884,907	+		ABIE40_RS14720	0.39	-1.1
2,884,907	+		ABIE40_RS14720	0.39	-1.4
2,884,907	+		ABIE40_RS14720	0.39	-0.8
2,884,907	+		ABIE40_RS14720	0.39	-4.2
2,884,908	-		ABIE40_RS14720	0.39	-0.1
2,884,908	-		ABIE40_RS14720	0.39	-1.7
2,884,943	+		ABIE40_RS14720	0.43	-2.5
2,884,943	+		ABIE40_RS14720	0.43	+0.3