Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS12920

Experiment: D-Serine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (C)
2,520,988	+		ABIE40_RS12910	0.55	+0.3
2,520,989	-		ABIE40_RS12910	0.55	+0.8
2,520,989	-		ABIE40_RS12910	0.55	-0.3
2,520,989	-		ABIE40_RS12910	0.55	-0.2
2,520,989	-		ABIE40_RS12910	0.55	+0.4
2,521,003	+		ABIE40_RS12910	0.57	-0.1
2,521,004	-		ABIE40_RS12910	0.57	+2.4
2,521,004	-		ABIE40_RS12910	0.57	-1.0
2,521,004	-		ABIE40_RS12910	0.57	-1.0
2,521,041	+		ABIE40_RS12910	0.61	+0.7
2,521,041	+		ABIE40_RS12910	0.61	-0.4
2,521,041	+		ABIE40_RS12910	0.61	-0.2
2,521,041	+		ABIE40_RS12910	0.61	+0.8
2,521,085	-		ABIE40_RS12910	0.66	-1.7
2,521,085	-		ABIE40_RS12910	0.66	-0.5
2,521,153	+		ABIE40_RS12910	0.73	+0.3
2,521,153	+		ABIE40_RS12910	0.73	-1.3
2,521,153	+		ABIE40_RS12910	0.73	+0.4
2,521,153	+		ABIE40_RS12910	0.73	-1.4
2,521,154	-		ABIE40_RS12910	0.73	+0.9
2,521,269	+		ABIE40_RS12910	0.86	+1.4
2,521,269	+		ABIE40_RS12910	0.86	-0.5
2,521,269	+		ABIE40_RS12910	0.86	+0.2
2,521,270	-		ABIE40_RS12910	0.86	+0.6
2,521,360	+				+1.2
2,521,361	-				-0.5
2,521,408	+				-0.8
2,521,408	+				+0.2
2,521,514	+		ABIE40_RS12915	0.31	+0.1
2,521,514	+		ABIE40_RS12915	0.31	+0.0
2,521,515	-		ABIE40_RS12915	0.31	-0.2
2,521,515	-		ABIE40_RS12915	0.31	+1.0
2,521,515	-		ABIE40_RS12915	0.31	-1.1
2,521,643	+		ABIE40_RS12915	0.76	-0.2
2,521,644	-		ABIE40_RS12915	0.76	+0.2
2,521,644	-		ABIE40_RS12915	0.76	+0.2
2,521,662	-		ABIE40_RS12915	0.83	-0.1
2,521,695	-				+1.3
2,521,793	-				+0.5
2,521,838	-				+2.0
2,521,857	-				+1.1
2,521,857	-				+0.7
2,521,898	+				+3.2
2,521,899	-				-0.0
2,521,909	+				-0.0
2,521,910	-				-0.5
2,521,940	+				-0.7
2,521,941	-				-0.4
2,522,087	+		ABIE40_RS12920	0.13	+1.6
2,522,213	-		ABIE40_RS12920	0.24	+0.3
2,522,259	+		ABIE40_RS12920	0.29	+1.0
2,522,260	-		ABIE40_RS12920	0.29	+0.2
2,522,260	-		ABIE40_RS12920	0.29	-0.2
2,522,260	-		ABIE40_RS12920	0.29	-0.5
2,522,340	+		ABIE40_RS12920	0.36	+1.4
2,522,340	+		ABIE40_RS12920	0.36	-0.4
2,522,340	+		ABIE40_RS12920	0.36	+0.0
2,522,341	-		ABIE40_RS12920	0.36	-0.2
2,522,341	-		ABIE40_RS12920	0.36	-0.1
2,522,341	-		ABIE40_RS12920	0.36	-0.6
2,522,341	-		ABIE40_RS12920	0.36	+2.2
2,522,341	-		ABIE40_RS12920	0.36	-0.9
2,522,364	+		ABIE40_RS12920	0.38	+0.0
2,522,364	+		ABIE40_RS12920	0.38	+1.4
2,522,364	+		ABIE40_RS12920	0.38	+0.1
2,522,364	+		ABIE40_RS12920	0.38	+1.8
2,522,364	+		ABIE40_RS12920	0.38	+0.0
2,522,364	+		ABIE40_RS12920	0.38	+0.4
2,522,364	+		ABIE40_RS12920	0.38	+0.6
2,522,365	-		ABIE40_RS12920	0.38	-0.0
2,522,365	-		ABIE40_RS12920	0.38	+1.6
2,522,365	-		ABIE40_RS12920	0.38	-0.5
2,522,365	-		ABIE40_RS12920	0.38	+0.0
2,522,439	+		ABIE40_RS12920	0.45	-0.6
2,522,440	-		ABIE40_RS12920	0.45	+2.1
2,522,442	+		ABIE40_RS12920	0.45	-0.1
2,522,442	+		ABIE40_RS12920	0.45	-0.6
2,522,478	+		ABIE40_RS12920	0.49	+0.1
2,522,517	+		ABIE40_RS12920	0.52	-0.0
2,522,517	+		ABIE40_RS12920	0.52	+3.0
2,522,517	+		ABIE40_RS12920	0.52	+1.1
2,522,518	-		ABIE40_RS12920	0.52	-0.2
2,522,518	-		ABIE40_RS12920	0.52	+0.9
2,522,518	-		ABIE40_RS12920	0.52	+0.2
2,522,518	-		ABIE40_RS12920	0.52	-2.2
2,522,518	-		ABIE40_RS12920	0.52	-0.8
2,522,529	+		ABIE40_RS12920	0.53	-1.5
2,522,529	+		ABIE40_RS12920	0.53	+0.0
2,522,529	+		ABIE40_RS12920	0.53	+0.0
2,522,529	+		ABIE40_RS12920	0.53	+1.8
2,522,530	-		ABIE40_RS12920	0.53	+0.9
2,522,530	-		ABIE40_RS12920	0.53	-1.2
2,522,530	-		ABIE40_RS12920	0.53	+1.2
2,522,530	-		ABIE40_RS12920	0.53	+1.4
2,522,530	-		ABIE40_RS12920	0.53	+0.2
2,522,530	-		ABIE40_RS12920	0.53	-0.4
2,522,530	-		ABIE40_RS12920	0.53	+2.6
2,522,530	-		ABIE40_RS12920	0.53	-1.0
2,522,868	+		ABIE40_RS12920	0.84	-1.0
2,522,868	+		ABIE40_RS12920	0.84	+0.6
2,522,868	+		ABIE40_RS12920	0.84	-0.3
2,523,039	+				+0.4
2,523,039	+				+0.0
2,523,040	-				-0.2
2,523,040	-				+1.5
2,523,040	-				+0.0
2,523,040	-				+0.0
2,523,080	-				+0.4
2,523,080	-				+0.4
2,523,088	+				+1.1
2,523,089	-				-0.7
2,523,089	-				-1.2
2,523,094	+				-0.6
2,523,095	-				-0.0
2,523,101	+				+1.4
2,523,101	+				-0.1
2,523,101	+				-0.4
2,523,101	+				-0.1
2,523,102	-				-0.8
2,523,102	-				+0.0
2,523,170	+				-1.0
2,523,170	+				-1.1
2,523,171	-				-3.6
2,523,323	+		ABIE40_RS12925	0.19	-3.8
2,523,324	-		ABIE40_RS12925	0.19	-0.4
2,523,329	+		ABIE40_RS12925	0.19	-2.9
2,523,329	+		ABIE40_RS12925	0.19	-1.5
2,523,330	-		ABIE40_RS12925	0.19	-2.9
2,523,330	-		ABIE40_RS12925	0.19	-0.7
2,523,330	-		ABIE40_RS12925	0.19	-0.4
2,523,330	-		ABIE40_RS12925	0.19	+0.6
2,523,330	-		ABIE40_RS12925	0.19	-2.8
2,523,330	-		ABIE40_RS12925	0.19	-4.9
2,523,433	-		ABIE40_RS12925	0.28	-2.5
2,523,554	+		ABIE40_RS12925	0.38	-2.0
2,523,582	-		ABIE40_RS12925	0.40	-2.2
2,523,582	-		ABIE40_RS12925	0.40	-2.2
2,523,620	+		ABIE40_RS12925	0.43	-2.7
2,523,668	+		ABIE40_RS12925	0.47	+0.6
2,523,668	+		ABIE40_RS12925	0.47	-3.1
2,523,668	+		ABIE40_RS12925	0.47	-1.4
2,523,669	-		ABIE40_RS12925	0.47	-4.5
2,523,669	-		ABIE40_RS12925	0.47	-3.8
2,523,683	+		ABIE40_RS12925	0.48	-2.0
2,523,683	+		ABIE40_RS12925	0.48	-4.0
2,523,683	+		ABIE40_RS12925	0.48	-4.0
2,523,683	+		ABIE40_RS12925	0.48	-3.0
2,523,683	+		ABIE40_RS12925	0.48	+0.0
2,523,684	-		ABIE40_RS12925	0.49	-4.3
2,523,684	-		ABIE40_RS12925	0.49	-1.7
2,523,684	-		ABIE40_RS12925	0.49	-0.4
2,523,684	-		ABIE40_RS12925	0.49	-3.2
2,523,684	-		ABIE40_RS12925	0.49	-1.2
2,523,684	-		ABIE40_RS12925	0.49	-4.3
2,523,760	-		ABIE40_RS12925	0.55	+1.6
2,523,760	-		ABIE40_RS12925	0.55	-3.5
2,523,761	+		ABIE40_RS12925	0.55	-2.5
2,523,761	+		ABIE40_RS12925	0.55	-1.8
2,523,762	-		ABIE40_RS12925	0.55	-1.4
2,523,932	+		ABIE40_RS12925	0.69	-3.8
2,523,933	-		ABIE40_RS12925	0.69	-3.1
2,523,933	-		ABIE40_RS12925	0.69	-2.4
2,523,933	-		ABIE40_RS12925	0.69	-1.2
2,524,035	+		ABIE40_RS12925	0.78	-2.9
2,524,035	+		ABIE40_RS12925	0.78	-0.4
2,524,035	+		ABIE40_RS12925	0.78	-3.1
2,524,035	+		ABIE40_RS12925	0.78	-2.5
2,524,035	+		ABIE40_RS12925	0.78	-1.2
2,524,036	-		ABIE40_RS12925	0.78	-2.8
2,524,036	-		ABIE40_RS12925	0.78	-2.3
2,524,036	-		ABIE40_RS12925	0.78	-2.5
2,524,036	-		ABIE40_RS12925	0.78	-1.4
2,524,036	-		ABIE40_RS12925	0.78	-2.9
2,524,036	-		ABIE40_RS12925	0.78	-3.0
2,524,036	-		ABIE40_RS12925	0.78	+0.6
2,524,037	+		ABIE40_RS12925	0.78	-1.7
2,524,038	-		ABIE40_RS12925	0.78	-2.4