Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09645

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09635 and ABIE40_RS09640 are separated by 141 nucleotidesABIE40_RS09640 and ABIE40_RS09645 are separated by 93 nucleotidesABIE40_RS09645 and ABIE40_RS09650 are separated by 135 nucleotides ABIE40_RS09635: ABIE40_RS09635 - CTP synthase, at 1,859,675 to 1,861,303 _RS09635 ABIE40_RS09640: ABIE40_RS09640 - preprotein translocase subunit SecG, at 1,861,445 to 1,861,990 _RS09640 ABIE40_RS09645: ABIE40_RS09645 - triose-phosphate isomerase, at 1,862,084 to 1,862,854 _RS09645 ABIE40_RS09650: ABIE40_RS09650 - alpha/beta hydrolase, at 1,862,990 to 1,863,874 _RS09650 Position (kb) 1862 1863Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1861.429 kb on + strandat 1861.429 kb on + strandat 1861.447 kb on - strandat 1861.447 kb on - strandat 1861.493 kb on - strandat 1861.745 kb on - strand, within ABIE40_RS09640at 1862.045 kb on - strandat 1862.045 kb on - strandat 1862.045 kb on - strandat 1862.075 kb on - strandat 1862.075 kb on - strandat 1862.075 kb on - strandat 1862.085 kb on + strandat 1862.103 kb on + strandat 1862.103 kb on + strandat 1862.103 kb on + strandat 1862.103 kb on + strandat 1862.103 kb on + strandat 1862.103 kb on + strandat 1862.103 kb on + strandat 1862.104 kb on - strandat 1862.112 kb on + strandat 1862.113 kb on - strandat 1862.186 kb on + strand, within ABIE40_RS09645at 1862.186 kb on + strand, within ABIE40_RS09645at 1862.186 kb on + strand, within ABIE40_RS09645at 1862.187 kb on - strand, within ABIE40_RS09645at 1862.300 kb on + strand, within ABIE40_RS09645at 1862.300 kb on + strand, within ABIE40_RS09645at 1862.301 kb on - strand, within ABIE40_RS09645at 1862.301 kb on - strand, within ABIE40_RS09645at 1862.301 kb on - strand, within ABIE40_RS09645at 1862.301 kb on - strand, within ABIE40_RS09645at 1862.301 kb on - strand, within ABIE40_RS09645at 1862.301 kb on - strand, within ABIE40_RS09645at 1862.353 kb on - strand, within ABIE40_RS09645at 1862.353 kb on - strand, within ABIE40_RS09645at 1862.353 kb on - strand, within ABIE40_RS09645at 1862.353 kb on - strand, within ABIE40_RS09645at 1862.353 kb on - strand, within ABIE40_RS09645at 1862.365 kb on + strand, within ABIE40_RS09645at 1862.365 kb on + strand, within ABIE40_RS09645at 1862.366 kb on - strand, within ABIE40_RS09645at 1862.419 kb on + strand, within ABIE40_RS09645at 1862.419 kb on + strand, within ABIE40_RS09645at 1862.574 kb on + strand, within ABIE40_RS09645at 1862.574 kb on + strand, within ABIE40_RS09645at 1862.574 kb on + strand, within ABIE40_RS09645at 1862.574 kb on + strand, within ABIE40_RS09645at 1862.574 kb on + strand, within ABIE40_RS09645at 1862.574 kb on + strand, within ABIE40_RS09645at 1862.574 kb on + strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.575 kb on - strand, within ABIE40_RS09645at 1862.611 kb on + strand, within ABIE40_RS09645at 1862.620 kb on + strand, within ABIE40_RS09645at 1862.621 kb on - strand, within ABIE40_RS09645at 1862.621 kb on - strand, within ABIE40_RS09645at 1862.700 kb on + strand, within ABIE40_RS09645at 1862.700 kb on + strand, within ABIE40_RS09645at 1862.700 kb on + strand, within ABIE40_RS09645at 1862.700 kb on + strand, within ABIE40_RS09645at 1862.700 kb on + strand, within ABIE40_RS09645at 1862.700 kb on + strand, within ABIE40_RS09645at 1862.700 kb on + strand, within ABIE40_RS09645at 1862.701 kb on - strand, within ABIE40_RS09645at 1862.701 kb on - strand, within ABIE40_RS09645at 1862.701 kb on - strand, within ABIE40_RS09645at 1862.701 kb on - strand, within ABIE40_RS09645at 1862.930 kb on + strandat 1862.930 kb on + strandat 1862.930 kb on + strandat 1862.930 kb on + strandat 1862.931 kb on - strandat 1862.931 kb on - strandat 1862.934 kb on + strandat 1862.934 kb on + strandat 1862.969 kb on - strandat 1862.969 kb on - strandat 1862.992 kb on - strandat 1862.992 kb on - strandat 1863.099 kb on + strand, within ABIE40_RS09650at 1863.099 kb on + strand, within ABIE40_RS09650at 1863.100 kb on - strand, within ABIE40_RS09650at 1863.100 kb on - strand, within ABIE40_RS09650at 1863.100 kb on - strand, within ABIE40_RS09650at 1863.138 kb on + strand, within ABIE40_RS09650at 1863.139 kb on - strand, within ABIE40_RS09650at 1863.139 kb on - strand, within ABIE40_RS09650at 1863.168 kb on + strand, within ABIE40_RS09650at 1863.168 kb on + strand, within ABIE40_RS09650at 1863.168 kb on + strand, within ABIE40_RS09650at 1863.168 kb on + strand, within ABIE40_RS09650at 1863.168 kb on + strand, within ABIE40_RS09650at 1863.169 kb on - strand, within ABIE40_RS09650at 1863.169 kb on - strand, within ABIE40_RS09650at 1863.189 kb on + strand, within ABIE40_RS09650at 1863.189 kb on + strand, within ABIE40_RS09650at 1863.189 kb on + strand, within ABIE40_RS09650at 1863.320 kb on + strand, within ABIE40_RS09650at 1863.320 kb on + strand, within ABIE40_RS09650at 1863.320 kb on + strand, within ABIE40_RS09650at 1863.320 kb on + strand, within ABIE40_RS09650at 1863.320 kb on + strand, within ABIE40_RS09650at 1863.321 kb on - strand, within ABIE40_RS09650at 1863.321 kb on - strand, within ABIE40_RS09650at 1863.321 kb on - strand, within ABIE40_RS09650at 1863.354 kb on + strand, within ABIE40_RS09650at 1863.355 kb on - strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.420 kb on + strand, within ABIE40_RS09650at 1863.421 kb on - strand, within ABIE40_RS09650at 1863.421 kb on - strand, within ABIE40_RS09650at 1863.639 kb on + strand, within ABIE40_RS09650at 1863.639 kb on + strand, within ABIE40_RS09650at 1863.639 kb on + strand, within ABIE40_RS09650at 1863.639 kb on + strand, within ABIE40_RS09650at 1863.639 kb on + strand, within ABIE40_RS09650at 1863.639 kb on + strand, within ABIE40_RS09650at 1863.640 kb on - strand, within ABIE40_RS09650at 1863.640 kb on - strand, within ABIE40_RS09650at 1863.640 kb on - strand, within ABIE40_RS09650at 1863.640 kb on - strand, within ABIE40_RS09650at 1863.640 kb on - strand, within ABIE40_RS09650at 1863.640 kb on - strand, within ABIE40_RS09650at 1863.806 kb on + strandat 1863.806 kb on + strandat 1863.807 kb on - strandat 1863.844 kb on + strandat 1863.845 kb on - strandat 1863.845 kb on - strandat 1863.845 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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1,861,429 + +1.0
1,861,429 + -0.4
1,861,447 - -0.3
1,861,447 - -0.0
1,861,493 - -0.5
1,861,745 - ABIE40_RS09640 0.55 -2.5
1,862,045 - -0.5
1,862,045 - -0.4
1,862,045 - +1.0
1,862,075 - -0.4
1,862,075 - -0.6
1,862,075 - +0.3
1,862,085 + -0.7
1,862,103 + -0.7
1,862,103 + -0.1
1,862,103 + -2.0
1,862,103 + -0.8
1,862,103 + -1.1
1,862,103 + -2.8
1,862,103 + -1.2
1,862,104 - -0.4
1,862,112 + -1.9
1,862,113 - -1.2
1,862,186 + ABIE40_RS09645 0.13 -2.7
1,862,186 + ABIE40_RS09645 0.13 -1.1
1,862,186 + ABIE40_RS09645 0.13 -0.5
1,862,187 - ABIE40_RS09645 0.13 -3.9
1,862,300 + ABIE40_RS09645 0.28 -0.6
1,862,300 + ABIE40_RS09645 0.28 -2.8
1,862,301 - ABIE40_RS09645 0.28 -1.8
1,862,301 - ABIE40_RS09645 0.28 -1.3
1,862,301 - ABIE40_RS09645 0.28 -1.9
1,862,301 - ABIE40_RS09645 0.28 -3.5
1,862,301 - ABIE40_RS09645 0.28 -2.2
1,862,301 - ABIE40_RS09645 0.28 -1.8
1,862,353 - ABIE40_RS09645 0.35 -2.8
1,862,353 - ABIE40_RS09645 0.35 -1.3
1,862,353 - ABIE40_RS09645 0.35 -3.1
1,862,353 - ABIE40_RS09645 0.35 -2.4
1,862,353 - ABIE40_RS09645 0.35 -0.2
1,862,365 + ABIE40_RS09645 0.36 -1.9
1,862,365 + ABIE40_RS09645 0.36 -1.2
1,862,366 - ABIE40_RS09645 0.37 -0.3
1,862,419 + ABIE40_RS09645 0.43 -0.9
1,862,419 + ABIE40_RS09645 0.43 -1.0
1,862,574 + ABIE40_RS09645 0.64 -0.0
1,862,574 + ABIE40_RS09645 0.64 -0.2
1,862,574 + ABIE40_RS09645 0.64 -2.0
1,862,574 + ABIE40_RS09645 0.64 -3.9
1,862,574 + ABIE40_RS09645 0.64 -1.9
1,862,574 + ABIE40_RS09645 0.64 -0.6
1,862,574 + ABIE40_RS09645 0.64 -2.8
1,862,575 - ABIE40_RS09645 0.64 -0.5
1,862,575 - ABIE40_RS09645 0.64 -1.8
1,862,575 - ABIE40_RS09645 0.64 -2.7
1,862,575 - ABIE40_RS09645 0.64 +0.7
1,862,575 - ABIE40_RS09645 0.64 -4.2
1,862,575 - ABIE40_RS09645 0.64 -2.2
1,862,575 - ABIE40_RS09645 0.64 -2.8
1,862,575 - ABIE40_RS09645 0.64 -0.1
1,862,575 - ABIE40_RS09645 0.64 -1.6
1,862,575 - ABIE40_RS09645 0.64 -1.1
1,862,575 - ABIE40_RS09645 0.64 +3.0
1,862,575 - ABIE40_RS09645 0.64 -1.8
1,862,611 + ABIE40_RS09645 0.68 -3.0
1,862,620 + ABIE40_RS09645 0.70 -3.5
1,862,621 - ABIE40_RS09645 0.70 -3.8
1,862,621 - ABIE40_RS09645 0.70 -1.7
1,862,700 + ABIE40_RS09645 0.80 -0.9
1,862,700 + ABIE40_RS09645 0.80 -0.9
1,862,700 + ABIE40_RS09645 0.80 -2.4
1,862,700 + ABIE40_RS09645 0.80 -3.8
1,862,700 + ABIE40_RS09645 0.80 -4.6
1,862,700 + ABIE40_RS09645 0.80 -1.2
1,862,700 + ABIE40_RS09645 0.80 -2.1
1,862,701 - ABIE40_RS09645 0.80 +1.4
1,862,701 - ABIE40_RS09645 0.80 -5.0
1,862,701 - ABIE40_RS09645 0.80 -1.9
1,862,701 - ABIE40_RS09645 0.80 -0.6
1,862,930 + +2.1
1,862,930 + -0.2
1,862,930 + -0.4
1,862,930 + -0.8
1,862,931 - +0.2
1,862,931 - +0.0
1,862,934 + +0.5
1,862,934 + +2.4
1,862,969 - -2.2
1,862,969 - +1.0
1,862,992 - -0.4
1,862,992 - +1.6
1,863,099 + ABIE40_RS09650 0.12 +0.2
1,863,099 + ABIE40_RS09650 0.12 -2.4
1,863,100 - ABIE40_RS09650 0.12 -0.3
1,863,100 - ABIE40_RS09650 0.12 -0.2
1,863,100 - ABIE40_RS09650 0.12 -0.1
1,863,138 + ABIE40_RS09650 0.17 -0.3
1,863,139 - ABIE40_RS09650 0.17 +0.7
1,863,139 - ABIE40_RS09650 0.17 -0.3
1,863,168 + ABIE40_RS09650 0.20 -0.6
1,863,168 + ABIE40_RS09650 0.20 -0.3
1,863,168 + ABIE40_RS09650 0.20 +0.8
1,863,168 + ABIE40_RS09650 0.20 -0.3
1,863,168 + ABIE40_RS09650 0.20 +0.2
1,863,169 - ABIE40_RS09650 0.20 +1.6
1,863,169 - ABIE40_RS09650 0.20 -0.9
1,863,189 + ABIE40_RS09650 0.22 +0.2
1,863,189 + ABIE40_RS09650 0.22 -0.4
1,863,189 + ABIE40_RS09650 0.22 -2.2
1,863,320 + ABIE40_RS09650 0.37 -0.3
1,863,320 + ABIE40_RS09650 0.37 -0.2
1,863,320 + ABIE40_RS09650 0.37 -1.3
1,863,320 + ABIE40_RS09650 0.37 -0.6
1,863,320 + ABIE40_RS09650 0.37 -0.8
1,863,321 - ABIE40_RS09650 0.37 -0.6
1,863,321 - ABIE40_RS09650 0.37 -0.5
1,863,321 - ABIE40_RS09650 0.37 -0.1
1,863,354 + ABIE40_RS09650 0.41 +0.5
1,863,355 - ABIE40_RS09650 0.41 -0.1
1,863,420 + ABIE40_RS09650 0.49 +0.6
1,863,420 + ABIE40_RS09650 0.49 +0.2
1,863,420 + ABIE40_RS09650 0.49 -1.0
1,863,420 + ABIE40_RS09650 0.49 +0.1
1,863,420 + ABIE40_RS09650 0.49 -1.2
1,863,420 + ABIE40_RS09650 0.49 +1.7
1,863,420 + ABIE40_RS09650 0.49 -0.2
1,863,420 + ABIE40_RS09650 0.49 +0.3
1,863,421 - ABIE40_RS09650 0.49 +0.0
1,863,421 - ABIE40_RS09650 0.49 +0.6
1,863,639 + ABIE40_RS09650 0.73 +1.9
1,863,639 + ABIE40_RS09650 0.73 +0.5
1,863,639 + ABIE40_RS09650 0.73 +0.3
1,863,639 + ABIE40_RS09650 0.73 -0.3
1,863,639 + ABIE40_RS09650 0.73 +0.3
1,863,639 + ABIE40_RS09650 0.73 -1.2
1,863,640 - ABIE40_RS09650 0.73 -1.8
1,863,640 - ABIE40_RS09650 0.73 +0.8
1,863,640 - ABIE40_RS09650 0.73 -0.4
1,863,640 - ABIE40_RS09650 0.73 +0.0
1,863,640 - ABIE40_RS09650 0.73 -0.4
1,863,640 - ABIE40_RS09650 0.73 -0.1
1,863,806 + +0.3
1,863,806 + +4.0
1,863,807 - -0.9
1,863,844 + +0.3
1,863,845 - -0.3
1,863,845 - +2.0
1,863,845 - -1.2

Or see this region's nucleotide sequence