Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04110 and ABIE40_RS04115 overlap by 4 nucleotides ABIE40_RS04115 and ABIE40_RS04120 are separated by 24 nucleotides ABIE40_RS04120 and ABIE40_RS04125 overlap by 4 nucleotides
ABIE40_RS04110: ABIE40_RS04110 - homoserine kinase, at 814,097 to 815,062
_RS04110
ABIE40_RS04115: ABIE40_RS04115 - ribonuclease HI, at 815,059 to 815,499
_RS04115
ABIE40_RS04120: ABIE40_RS04120 - endonuclease/exonuclease/phosphatase family protein, at 815,524 to 816,327
_RS04120
ABIE40_RS04125: ABIE40_RS04125 - diguanylate cyclase, at 816,324 to 818,219
_RS04125
Position (kb) 815
816 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 814.071 kb on + strand at 814.071 kb on + strand at 815.272 kb on + strand, within ABIE40_RS04115 at 815.272 kb on + strand, within ABIE40_RS04115 at 815.273 kb on - strand, within ABIE40_RS04115 at 815.485 kb on + strand at 815.485 kb on + strand at 815.485 kb on + strand at 815.485 kb on + strand at 815.486 kb on - strand at 815.486 kb on - strand at 815.486 kb on - strand at 815.486 kb on - strand at 815.486 kb on - strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.497 kb on + strand at 815.498 kb on - strand at 815.498 kb on - strand at 815.578 kb on + strand at 815.581 kb on + strand at 815.581 kb on + strand at 815.582 kb on - strand at 815.582 kb on - strand at 815.626 kb on - strand, within ABIE40_RS04120 at 815.681 kb on + strand, within ABIE40_RS04120 at 815.681 kb on + strand, within ABIE40_RS04120 at 815.681 kb on + strand, within ABIE40_RS04120 at 815.681 kb on + strand, within ABIE40_RS04120 at 815.682 kb on - strand, within ABIE40_RS04120 at 815.682 kb on - strand, within ABIE40_RS04120 at 815.682 kb on - strand, within ABIE40_RS04120 at 815.682 kb on - strand, within ABIE40_RS04120 at 815.682 kb on - strand, within ABIE40_RS04120 at 815.890 kb on + strand, within ABIE40_RS04120 at 815.941 kb on + strand, within ABIE40_RS04120 at 815.942 kb on - strand, within ABIE40_RS04120 at 815.942 kb on - strand, within ABIE40_RS04120 at 816.009 kb on + strand, within ABIE40_RS04120 at 816.009 kb on + strand, within ABIE40_RS04120 at 816.009 kb on + strand, within ABIE40_RS04120 at 816.009 kb on + strand, within ABIE40_RS04120 at 816.010 kb on - strand, within ABIE40_RS04120 at 816.010 kb on - strand, within ABIE40_RS04120 at 816.010 kb on - strand, within ABIE40_RS04120 at 816.061 kb on - strand, within ABIE40_RS04120 at 816.107 kb on + strand, within ABIE40_RS04120 at 816.107 kb on + strand, within ABIE40_RS04120 at 816.108 kb on - strand, within ABIE40_RS04120 at 816.117 kb on + strand, within ABIE40_RS04120 at 816.229 kb on + strand, within ABIE40_RS04120 at 816.252 kb on - strand at 816.258 kb on + strand at 816.325 kb on + strand at 816.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 814,071 + +1.3 814,071 + -0.8 815,272 + ABIE40_RS04115 0.48 -1.3 815,272 + ABIE40_RS04115 0.48 -0.9 815,273 - ABIE40_RS04115 0.49 -0.7 815,485 + -0.5 815,485 + -1.0 815,485 + +0.3 815,485 + +1.3 815,486 - +0.2 815,486 - -1.0 815,486 - -0.9 815,486 - -0.1 815,486 - +0.3 815,497 + -1.6 815,497 + +0.4 815,497 + +1.5 815,498 - +0.4 815,498 - -0.7 815,578 + -1.0 815,581 + +0.7 815,581 + +0.9 815,582 - +0.3 815,582 - +2.7 815,626 - ABIE40_RS04120 0.13 +2.1 815,681 + ABIE40_RS04120 0.20 -0.4 815,681 + ABIE40_RS04120 0.20 +0.1 815,681 + ABIE40_RS04120 0.20 -0.0 815,681 + ABIE40_RS04120 0.20 +0.0 815,682 - ABIE40_RS04120 0.20 +0.5 815,682 - ABIE40_RS04120 0.20 +1.4 815,682 - ABIE40_RS04120 0.20 -0.5 815,682 - ABIE40_RS04120 0.20 -0.3 815,682 - ABIE40_RS04120 0.20 +0.9 815,890 + ABIE40_RS04120 0.46 -0.2 815,941 + ABIE40_RS04120 0.52 -0.5 815,942 - ABIE40_RS04120 0.52 -0.2 815,942 - ABIE40_RS04120 0.52 -0.2 816,009 + ABIE40_RS04120 0.60 -0.3 816,009 + ABIE40_RS04120 0.60 -1.8 816,009 + ABIE40_RS04120 0.60 -0.1 816,009 + ABIE40_RS04120 0.60 +3.5 816,010 - ABIE40_RS04120 0.60 -0.4 816,010 - ABIE40_RS04120 0.60 -1.5 816,010 - ABIE40_RS04120 0.60 +0.0 816,061 - ABIE40_RS04120 0.67 +1.2 816,107 + ABIE40_RS04120 0.73 -0.5 816,107 + ABIE40_RS04120 0.73 -0.1 816,108 - ABIE40_RS04120 0.73 -0.2 816,117 + ABIE40_RS04120 0.74 +2.5 816,229 + ABIE40_RS04120 0.88 -0.5 816,252 - -1.1 816,258 + +0.2 816,325 + -0.8 816,400 + -0.4
Or see this region's nucleotide sequence