Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02240

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02235 and ABIE40_RS02240 are separated by 228 nucleotidesABIE40_RS02240 and ABIE40_RS02245 are separated by 3 nucleotides ABIE40_RS02235: ABIE40_RS02235 - altronate dehydratase family protein, at 441,166 to 442,668 _RS02235 ABIE40_RS02240: ABIE40_RS02240 - GntR family transcriptional regulator, at 442,897 to 443,793 _RS02240 ABIE40_RS02245: ABIE40_RS02245 - MDR family MFS transporter, at 443,797 to 445,287 _RS02245 Position (kb) 442 443 444Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 442.047 kb on - strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.116 kb on + strand, within ABIE40_RS02235at 442.119 kb on - strand, within ABIE40_RS02235at 442.119 kb on - strand, within ABIE40_RS02235at 442.119 kb on - strand, within ABIE40_RS02235at 442.220 kb on + strand, within ABIE40_RS02235at 442.220 kb on + strand, within ABIE40_RS02235at 442.221 kb on - strand, within ABIE40_RS02235at 442.221 kb on - strand, within ABIE40_RS02235at 442.221 kb on - strand, within ABIE40_RS02235at 442.305 kb on + strand, within ABIE40_RS02235at 442.306 kb on - strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.307 kb on + strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.308 kb on - strand, within ABIE40_RS02235at 442.343 kb on + strand, within ABIE40_RS02235at 442.343 kb on + strand, within ABIE40_RS02235at 442.344 kb on - strand, within ABIE40_RS02235at 442.344 kb on - strand, within ABIE40_RS02235at 442.344 kb on - strand, within ABIE40_RS02235at 442.500 kb on - strand, within ABIE40_RS02235at 442.629 kb on + strandat 442.630 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.672 kb on - strandat 442.739 kb on - strandat 442.762 kb on + strandat 442.762 kb on + strandat 442.763 kb on - strandat 442.810 kb on + strandat 442.813 kb on + strandat 442.814 kb on - strandat 442.815 kb on + strandat 442.815 kb on + strandat 442.815 kb on + strandat 442.816 kb on - strandat 442.816 kb on - strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.831 kb on + strandat 442.832 kb on - strandat 442.832 kb on - strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.911 kb on + strandat 442.912 kb on - strandat 442.912 kb on - strandat 442.930 kb on + strandat 442.930 kb on + strandat 442.930 kb on + strandat 442.930 kb on + strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.931 kb on - strandat 442.939 kb on + strandat 443.420 kb on - strand, within ABIE40_RS02240at 443.497 kb on + strand, within ABIE40_RS02240at 443.498 kb on - strand, within ABIE40_RS02240at 443.579 kb on - strand, within ABIE40_RS02240at 443.605 kb on + strand, within ABIE40_RS02240at 443.606 kb on - strand, within ABIE40_RS02240at 443.611 kb on + strand, within ABIE40_RS02240at 443.612 kb on - strand, within ABIE40_RS02240at 443.669 kb on + strand, within ABIE40_RS02240at 443.674 kb on + strand, within ABIE40_RS02240at 443.674 kb on + strand, within ABIE40_RS02240at 443.676 kb on + strand, within ABIE40_RS02240at 443.676 kb on + strand, within ABIE40_RS02240at 443.676 kb on + strand, within ABIE40_RS02240at 443.676 kb on + strand, within ABIE40_RS02240at 443.677 kb on - strand, within ABIE40_RS02240at 443.677 kb on - strand, within ABIE40_RS02240at 443.677 kb on - strand, within ABIE40_RS02240at 443.677 kb on - strand, within ABIE40_RS02240at 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 444.010 kb on - strand, within ABIE40_RS02245at 444.032 kb on + strand, within ABIE40_RS02245at 444.032 kb on + strand, within ABIE40_RS02245at 444.032 kb on + strand, within ABIE40_RS02245at 444.032 kb on + strand, within ABIE40_RS02245at 444.032 kb on + strand, within ABIE40_RS02245at 444.032 kb on + strand, within ABIE40_RS02245at 444.032 kb on + strand, within ABIE40_RS02245at 444.033 kb on - strand, within ABIE40_RS02245at 444.084 kb on + strand, within ABIE40_RS02245at 444.084 kb on + strand, within ABIE40_RS02245at 444.085 kb on - strand, within ABIE40_RS02245at 444.085 kb on - strand, within ABIE40_RS02245at 444.085 kb on - strand, within ABIE40_RS02245at 444.418 kb on + strand, within ABIE40_RS02245at 444.418 kb on + strand, within ABIE40_RS02245at 444.430 kb on - strand, within ABIE40_RS02245at 444.430 kb on - strand, within ABIE40_RS02245at 444.430 kb on - strand, within ABIE40_RS02245at 444.430 kb on - strand, within ABIE40_RS02245at 444.431 kb on + strand, within ABIE40_RS02245at 444.431 kb on + strand, within ABIE40_RS02245at 444.431 kb on + strand, within ABIE40_RS02245at 444.431 kb on + strand, within ABIE40_RS02245at 444.432 kb on - strand, within ABIE40_RS02245at 444.432 kb on - strand, within ABIE40_RS02245at 444.489 kb on + strand, within ABIE40_RS02245at 444.489 kb on + strand, within ABIE40_RS02245at 444.489 kb on + strand, within ABIE40_RS02245at 444.490 kb on - strand, within ABIE40_RS02245at 444.490 kb on - strand, within ABIE40_RS02245at 444.692 kb on + strand, within ABIE40_RS02245at 444.693 kb on - strand, within ABIE40_RS02245at 444.772 kb on + strand, within ABIE40_RS02245at 444.773 kb on - strand, within ABIE40_RS02245

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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442,047 - ABIE40_RS02235 0.59 -2.2
442,116 + ABIE40_RS02235 0.63 -0.2
442,116 + ABIE40_RS02235 0.63 -1.2
442,116 + ABIE40_RS02235 0.63 -0.4
442,116 + ABIE40_RS02235 0.63 +0.1
442,116 + ABIE40_RS02235 0.63 -0.3
442,119 - ABIE40_RS02235 0.63 +0.0
442,119 - ABIE40_RS02235 0.63 +0.8
442,119 - ABIE40_RS02235 0.63 -1.8
442,220 + ABIE40_RS02235 0.70 -0.1
442,220 + ABIE40_RS02235 0.70 +0.1
442,221 - ABIE40_RS02235 0.70 -1.6
442,221 - ABIE40_RS02235 0.70 +0.6
442,221 - ABIE40_RS02235 0.70 +1.1
442,305 + ABIE40_RS02235 0.76 +0.4
442,306 - ABIE40_RS02235 0.76 +0.4
442,307 + ABIE40_RS02235 0.76 +0.9
442,307 + ABIE40_RS02235 0.76 +0.4
442,307 + ABIE40_RS02235 0.76 +0.1
442,307 + ABIE40_RS02235 0.76 +0.4
442,307 + ABIE40_RS02235 0.76 -0.2
442,307 + ABIE40_RS02235 0.76 -1.2
442,308 - ABIE40_RS02235 0.76 +0.8
442,308 - ABIE40_RS02235 0.76 -0.8
442,308 - ABIE40_RS02235 0.76 -0.2
442,308 - ABIE40_RS02235 0.76 -1.6
442,308 - ABIE40_RS02235 0.76 +0.5
442,308 - ABIE40_RS02235 0.76 -1.2
442,308 - ABIE40_RS02235 0.76 -0.4
442,308 - ABIE40_RS02235 0.76 +0.1
442,308 - ABIE40_RS02235 0.76 -1.4
442,343 + ABIE40_RS02235 0.78 +0.4
442,343 + ABIE40_RS02235 0.78 +0.2
442,344 - ABIE40_RS02235 0.78 +1.3
442,344 - ABIE40_RS02235 0.78 -0.4
442,344 - ABIE40_RS02235 0.78 -1.2
442,500 - ABIE40_RS02235 0.89 +0.9
442,629 + +0.7
442,630 - +0.4
442,672 - +2.2
442,672 - -0.5
442,672 - +0.1
442,672 - +0.6
442,672 - -1.3
442,672 - -0.6
442,739 - -1.0
442,762 + -0.3
442,762 + -0.7
442,763 - -0.9
442,810 + +0.1
442,813 + -1.1
442,814 - -0.9
442,815 + -0.5
442,815 + +0.3
442,815 + +0.3
442,816 - -0.7
442,816 - -1.3
442,831 + -0.7
442,831 + +0.7
442,831 + +2.4
442,831 + -1.4
442,831 + -0.7
442,831 + -0.5
442,832 - -0.1
442,832 - -2.1
442,911 + -1.3
442,911 + -1.5
442,911 + -1.3
442,911 + -1.1
442,911 + -0.1
442,911 + -2.5
442,911 + -2.9
442,912 - -1.8
442,912 - -0.1
442,930 + -0.1
442,930 + -2.3
442,930 + -2.1
442,930 + -2.4
442,931 - -2.2
442,931 - -0.4
442,931 - -3.6
442,931 - -2.1
442,931 - -1.1
442,939 + -1.7
443,420 - ABIE40_RS02240 0.58 -1.5
443,497 + ABIE40_RS02240 0.67 -0.9
443,498 - ABIE40_RS02240 0.67 -2.1
443,579 - ABIE40_RS02240 0.76 -1.3
443,605 + ABIE40_RS02240 0.79 -2.3
443,606 - ABIE40_RS02240 0.79 -1.7
443,611 + ABIE40_RS02240 0.80 -0.4
443,612 - ABIE40_RS02240 0.80 -1.9
443,669 + ABIE40_RS02240 0.86 -1.2
443,674 + ABIE40_RS02240 0.87 -1.2
443,674 + ABIE40_RS02240 0.87 -4.0
443,676 + ABIE40_RS02240 0.87 -1.4
443,676 + ABIE40_RS02240 0.87 -0.8
443,676 + ABIE40_RS02240 0.87 +0.9
443,676 + ABIE40_RS02240 0.87 -2.0
443,677 - ABIE40_RS02240 0.87 -1.8
443,677 - ABIE40_RS02240 0.87 -2.0
443,677 - ABIE40_RS02240 0.87 +0.4
443,677 - ABIE40_RS02240 0.87 +0.8
443,798 + +0.7
443,798 + -0.2
443,798 + -0.3
443,798 + -0.6
443,799 - +0.5
443,799 - -0.9
443,799 - +2.9
443,799 - -1.1
444,010 - ABIE40_RS02245 0.14 +0.0
444,032 + ABIE40_RS02245 0.16 +0.9
444,032 + ABIE40_RS02245 0.16 +0.3
444,032 + ABIE40_RS02245 0.16 -1.6
444,032 + ABIE40_RS02245 0.16 +0.4
444,032 + ABIE40_RS02245 0.16 -0.3
444,032 + ABIE40_RS02245 0.16 -0.4
444,032 + ABIE40_RS02245 0.16 -1.2
444,033 - ABIE40_RS02245 0.16 +1.5
444,084 + ABIE40_RS02245 0.19 +0.2
444,084 + ABIE40_RS02245 0.19 -0.5
444,085 - ABIE40_RS02245 0.19 +0.4
444,085 - ABIE40_RS02245 0.19 +0.2
444,085 - ABIE40_RS02245 0.19 -2.0
444,418 + ABIE40_RS02245 0.42 +0.3
444,418 + ABIE40_RS02245 0.42 +0.1
444,430 - ABIE40_RS02245 0.42 -1.9
444,430 - ABIE40_RS02245 0.42 -1.2
444,430 - ABIE40_RS02245 0.42 +0.7
444,430 - ABIE40_RS02245 0.42 -0.2
444,431 + ABIE40_RS02245 0.43 -0.9
444,431 + ABIE40_RS02245 0.43 +1.5
444,431 + ABIE40_RS02245 0.43 +0.5
444,431 + ABIE40_RS02245 0.43 -2.0
444,432 - ABIE40_RS02245 0.43 +0.4
444,432 - ABIE40_RS02245 0.43 +0.1
444,489 + ABIE40_RS02245 0.46 +0.8
444,489 + ABIE40_RS02245 0.46 +1.4
444,489 + ABIE40_RS02245 0.46 -0.8
444,490 - ABIE40_RS02245 0.46 +0.1
444,490 - ABIE40_RS02245 0.46 -0.3
444,692 + ABIE40_RS02245 0.60 +0.5
444,693 - ABIE40_RS02245 0.60 -0.6
444,772 + ABIE40_RS02245 0.65 +0.6
444,773 - ABIE40_RS02245 0.65 +0.4

Or see this region's nucleotide sequence