Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02075

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02060 and ABIE40_RS02065 overlap by 16 nucleotidesABIE40_RS02065 and ABIE40_RS02070 are separated by 50 nucleotidesABIE40_RS02070 and ABIE40_RS02075 overlap by 17 nucleotidesABIE40_RS02075 and ABIE40_RS02080 are separated by 239 nucleotides ABIE40_RS02060: ABIE40_RS02060 - BrnA antitoxin family protein, at 405,256 to 405,564 _RS02060 ABIE40_RS02065: ABIE40_RS02065 - BrnT family toxin, at 405,549 to 405,824 _RS02065 ABIE40_RS02070: ABIE40_RS02070 - RbsD/FucU domain-containing protein, at 405,875 to 406,357 _RS02070 ABIE40_RS02075: ABIE40_RS02075 - ROK family transcriptional regulator, at 406,341 to 407,588 _RS02075 ABIE40_RS02080: ABIE40_RS02080 - sugar ABC transporter substrate-binding protein, at 407,828 to 408,847 _RS02080 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 405.667 kb on + strand, within ABIE40_RS02065at 405.667 kb on + strand, within ABIE40_RS02065at 405.667 kb on + strand, within ABIE40_RS02065at 405.667 kb on + strand, within ABIE40_RS02065at 405.668 kb on - strand, within ABIE40_RS02065at 405.668 kb on - strand, within ABIE40_RS02065at 405.668 kb on - strand, within ABIE40_RS02065at 405.668 kb on - strand, within ABIE40_RS02065at 405.670 kb on + strand, within ABIE40_RS02065at 405.671 kb on - strand, within ABIE40_RS02065at 405.671 kb on - strand, within ABIE40_RS02065at 405.779 kb on + strand, within ABIE40_RS02065at 405.779 kb on + strand, within ABIE40_RS02065at 405.780 kb on - strand, within ABIE40_RS02065at 405.780 kb on - strand, within ABIE40_RS02065at 405.800 kb on + strandat 405.800 kb on + strandat 405.800 kb on + strandat 405.801 kb on - strandat 405.801 kb on - strandat 405.831 kb on - strandat 405.835 kb on + strandat 405.836 kb on - strandat 405.839 kb on + strandat 405.845 kb on - strandat 405.879 kb on + strandat 405.879 kb on + strandat 405.937 kb on - strand, within ABIE40_RS02070at 406.024 kb on - strand, within ABIE40_RS02070at 406.260 kb on + strand, within ABIE40_RS02070at 406.260 kb on + strand, within ABIE40_RS02070at 406.261 kb on - strand, within ABIE40_RS02070at 406.687 kb on + strand, within ABIE40_RS02075at 406.688 kb on - strand, within ABIE40_RS02075at 406.688 kb on - strand, within ABIE40_RS02075at 406.688 kb on - strand, within ABIE40_RS02075at 406.891 kb on + strand, within ABIE40_RS02075at 406.891 kb on + strand, within ABIE40_RS02075at 406.892 kb on - strand, within ABIE40_RS02075at 406.892 kb on - strand, within ABIE40_RS02075at 406.906 kb on + strand, within ABIE40_RS02075at 406.979 kb on - strand, within ABIE40_RS02075at 407.160 kb on + strand, within ABIE40_RS02075at 407.160 kb on + strand, within ABIE40_RS02075at 407.160 kb on + strand, within ABIE40_RS02075at 407.161 kb on - strand, within ABIE40_RS02075at 407.161 kb on - strand, within ABIE40_RS02075at 407.161 kb on - strand, within ABIE40_RS02075at 407.161 kb on - strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.200 kb on + strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.201 kb on - strand, within ABIE40_RS02075at 407.225 kb on + strand, within ABIE40_RS02075at 407.225 kb on + strand, within ABIE40_RS02075at 407.290 kb on + strand, within ABIE40_RS02075at 407.290 kb on + strand, within ABIE40_RS02075at 407.291 kb on - strand, within ABIE40_RS02075at 407.461 kb on + strand, within ABIE40_RS02075at 407.461 kb on + strand, within ABIE40_RS02075at 407.497 kb on + strandat 407.542 kb on - strandat 407.615 kb on - strandat 407.615 kb on - strandat 407.649 kb on + strandat 407.671 kb on + strandat 407.700 kb on - strandat 407.807 kb on + strandat 407.808 kb on - strandat 408.008 kb on + strand, within ABIE40_RS02080at 408.008 kb on + strand, within ABIE40_RS02080at 408.008 kb on + strand, within ABIE40_RS02080at 408.009 kb on - strand, within ABIE40_RS02080at 408.085 kb on + strand, within ABIE40_RS02080at 408.085 kb on + strand, within ABIE40_RS02080at 408.545 kb on + strand, within ABIE40_RS02080at 408.545 kb on + strand, within ABIE40_RS02080at 408.545 kb on + strand, within ABIE40_RS02080at 408.546 kb on - strand, within ABIE40_RS02080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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405,667 + ABIE40_RS02065 0.43 -0.3
405,667 + ABIE40_RS02065 0.43 -0.3
405,667 + ABIE40_RS02065 0.43 +1.4
405,667 + ABIE40_RS02065 0.43 -0.7
405,668 - ABIE40_RS02065 0.43 +0.3
405,668 - ABIE40_RS02065 0.43 -0.2
405,668 - ABIE40_RS02065 0.43 +0.8
405,668 - ABIE40_RS02065 0.43 -0.4
405,670 + ABIE40_RS02065 0.44 -0.0
405,671 - ABIE40_RS02065 0.44 +0.2
405,671 - ABIE40_RS02065 0.44 +0.1
405,779 + ABIE40_RS02065 0.83 -1.6
405,779 + ABIE40_RS02065 0.83 -1.2
405,780 - ABIE40_RS02065 0.84 +0.6
405,780 - ABIE40_RS02065 0.84 -0.3
405,800 + -0.4
405,800 + +1.2
405,800 + +0.6
405,801 - +0.1
405,801 - -1.3
405,831 - +0.6
405,835 + -0.5
405,836 - +0.8
405,839 + -0.0
405,845 - -0.2
405,879 + -0.0
405,879 + -0.9
405,937 - ABIE40_RS02070 0.13 +0.6
406,024 - ABIE40_RS02070 0.31 -0.6
406,260 + ABIE40_RS02070 0.80 -0.2
406,260 + ABIE40_RS02070 0.80 -0.5
406,261 - ABIE40_RS02070 0.80 -0.3
406,687 + ABIE40_RS02075 0.28 -1.7
406,688 - ABIE40_RS02075 0.28 -2.3
406,688 - ABIE40_RS02075 0.28 +1.5
406,688 - ABIE40_RS02075 0.28 -1.3
406,891 + ABIE40_RS02075 0.44 -2.0
406,891 + ABIE40_RS02075 0.44 -1.5
406,892 - ABIE40_RS02075 0.44 -0.7
406,892 - ABIE40_RS02075 0.44 -1.2
406,906 + ABIE40_RS02075 0.45 -1.5
406,979 - ABIE40_RS02075 0.51 -3.7
407,160 + ABIE40_RS02075 0.66 +0.1
407,160 + ABIE40_RS02075 0.66 +0.5
407,160 + ABIE40_RS02075 0.66 +0.1
407,161 - ABIE40_RS02075 0.66 -0.2
407,161 - ABIE40_RS02075 0.66 +1.0
407,161 - ABIE40_RS02075 0.66 +0.1
407,161 - ABIE40_RS02075 0.66 -2.4
407,200 + ABIE40_RS02075 0.69 -2.5
407,200 + ABIE40_RS02075 0.69 -3.2
407,200 + ABIE40_RS02075 0.69 -0.7
407,200 + ABIE40_RS02075 0.69 -0.9
407,200 + ABIE40_RS02075 0.69 -0.3
407,200 + ABIE40_RS02075 0.69 -2.0
407,200 + ABIE40_RS02075 0.69 -0.4
407,200 + ABIE40_RS02075 0.69 -0.4
407,200 + ABIE40_RS02075 0.69 -0.9
407,200 + ABIE40_RS02075 0.69 -1.5
407,200 + ABIE40_RS02075 0.69 -1.9
407,200 + ABIE40_RS02075 0.69 +0.4
407,200 + ABIE40_RS02075 0.69 -2.4
407,200 + ABIE40_RS02075 0.69 -2.0
407,200 + ABIE40_RS02075 0.69 -2.7
407,201 - ABIE40_RS02075 0.69 -2.7
407,201 - ABIE40_RS02075 0.69 -1.4
407,201 - ABIE40_RS02075 0.69 -1.9
407,201 - ABIE40_RS02075 0.69 +0.4
407,201 - ABIE40_RS02075 0.69 -1.2
407,201 - ABIE40_RS02075 0.69 -1.8
407,201 - ABIE40_RS02075 0.69 -0.7
407,201 - ABIE40_RS02075 0.69 -2.7
407,201 - ABIE40_RS02075 0.69 -2.0
407,225 + ABIE40_RS02075 0.71 -0.6
407,225 + ABIE40_RS02075 0.71 -0.2
407,290 + ABIE40_RS02075 0.76 -2.4
407,290 + ABIE40_RS02075 0.76 +0.5
407,291 - ABIE40_RS02075 0.76 -2.1
407,461 + ABIE40_RS02075 0.90 -0.9
407,461 + ABIE40_RS02075 0.90 -1.4
407,497 + -1.3
407,542 - -1.2
407,615 - +2.2
407,615 - -1.2
407,649 + +0.9
407,671 + -0.9
407,700 - +0.5
407,807 + +0.1
407,808 - +1.6
408,008 + ABIE40_RS02080 0.18 +1.0
408,008 + ABIE40_RS02080 0.18 +0.8
408,008 + ABIE40_RS02080 0.18 -1.3
408,009 - ABIE40_RS02080 0.18 -1.5
408,085 + ABIE40_RS02080 0.25 -0.5
408,085 + ABIE40_RS02080 0.25 -0.9
408,545 + ABIE40_RS02080 0.70 -0.3
408,545 + ABIE40_RS02080 0.70 -0.6
408,545 + ABIE40_RS02080 0.70 -0.4
408,546 - ABIE40_RS02080 0.70 -0.2

Or see this region's nucleotide sequence