Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00245

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00235 and ABIE40_RS00240 are separated by 155 nucleotidesABIE40_RS00240 and ABIE40_RS00245 are separated by 10 nucleotidesABIE40_RS00245 and ABIE40_RS00250 are separated by 32 nucleotidesABIE40_RS00250 and ABIE40_RS00255 are separated by 99 nucleotidesABIE40_RS00255 and ABIE40_RS00260 are separated by 67 nucleotides ABIE40_RS00235: ABIE40_RS00235 - cytochrome c family protein, at 51,096 to 51,674 _RS00235 ABIE40_RS00240: ABIE40_RS00240 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 51,830 to 52,585 _RS00240 ABIE40_RS00245: ABIE40_RS00245 - prephenate dehydratase, at 52,596 to 53,456 _RS00245 ABIE40_RS00250: ABIE40_RS00250 - VOC family protein, at 53,489 to 53,857 _RS00250 ABIE40_RS00255: ABIE40_RS00255 - hypothetical protein, at 53,957 to 54,181 _RS00255 ABIE40_RS00260: ABIE40_RS00260 - YafY family protein, at 54,249 to 54,944 _RS00260 Position (kb) 52 53 54Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 51.657 kb on - strandat 51.664 kb on + strandat 51.707 kb on - strandat 51.715 kb on - strandat 51.739 kb on + strandat 51.739 kb on + strandat 51.740 kb on - strandat 51.769 kb on + strandat 51.769 kb on + strandat 51.769 kb on + strandat 51.769 kb on + strandat 51.815 kb on + strandat 51.815 kb on + strandat 52.591 kb on + strandat 52.591 kb on + strandat 52.591 kb on + strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.592 kb on - strandat 52.793 kb on + strand, within ABIE40_RS00245at 52.796 kb on - strand, within ABIE40_RS00245at 52.826 kb on + strand, within ABIE40_RS00245at 52.827 kb on - strand, within ABIE40_RS00245at 52.839 kb on + strand, within ABIE40_RS00245at 52.840 kb on - strand, within ABIE40_RS00245at 53.068 kb on - strand, within ABIE40_RS00245at 53.068 kb on - strand, within ABIE40_RS00245at 53.078 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.229 kb on + strand, within ABIE40_RS00245at 53.230 kb on - strand, within ABIE40_RS00245at 53.230 kb on - strand, within ABIE40_RS00245at 53.286 kb on + strand, within ABIE40_RS00245at 53.286 kb on + strand, within ABIE40_RS00245at 53.286 kb on + strand, within ABIE40_RS00245at 53.287 kb on - strand, within ABIE40_RS00245at 53.322 kb on + strand, within ABIE40_RS00245at 53.322 kb on + strand, within ABIE40_RS00245at 53.322 kb on + strand, within ABIE40_RS00245at 53.322 kb on + strand, within ABIE40_RS00245at 53.323 kb on - strand, within ABIE40_RS00245at 53.323 kb on - strand, within ABIE40_RS00245at 53.323 kb on - strand, within ABIE40_RS00245at 53.323 kb on - strand, within ABIE40_RS00245at 53.418 kb on + strandat 53.418 kb on + strandat 53.418 kb on + strandat 53.418 kb on + strandat 53.418 kb on + strandat 53.418 kb on + strandat 53.418 kb on + strandat 53.419 kb on - strandat 53.419 kb on - strandat 53.419 kb on - strandat 53.454 kb on + strandat 53.454 kb on + strandat 53.455 kb on - strandat 53.613 kb on + strand, within ABIE40_RS00250at 53.613 kb on + strand, within ABIE40_RS00250at 53.613 kb on + strand, within ABIE40_RS00250at 53.613 kb on + strand, within ABIE40_RS00250at 53.613 kb on + strand, within ABIE40_RS00250at 53.613 kb on + strand, within ABIE40_RS00250at 53.614 kb on - strand, within ABIE40_RS00250at 53.614 kb on - strand, within ABIE40_RS00250at 53.614 kb on - strand, within ABIE40_RS00250at 53.616 kb on + strand, within ABIE40_RS00250at 53.616 kb on + strand, within ABIE40_RS00250at 53.616 kb on + strand, within ABIE40_RS00250at 53.616 kb on + strand, within ABIE40_RS00250at 53.617 kb on - strand, within ABIE40_RS00250at 53.617 kb on - strand, within ABIE40_RS00250at 53.617 kb on - strand, within ABIE40_RS00250at 53.617 kb on - strand, within ABIE40_RS00250at 53.796 kb on + strand, within ABIE40_RS00250at 53.796 kb on + strand, within ABIE40_RS00250at 53.797 kb on - strand, within ABIE40_RS00250at 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.829 kb on + strandat 53.830 kb on - strandat 53.830 kb on - strandat 53.830 kb on - strandat 53.830 kb on - strandat 53.830 kb on - strandat 53.864 kb on - strandat 53.864 kb on - strandat 53.864 kb on - strandat 53.920 kb on + strandat 53.941 kb on + strandat 53.942 kb on - strandat 53.942 kb on - strandat 53.944 kb on + strandat 53.944 kb on + strandat 53.958 kb on + strandat 54.064 kb on + strand, within ABIE40_RS00255at 54.065 kb on - strand, within ABIE40_RS00255at 54.150 kb on + strand, within ABIE40_RS00255at 54.151 kb on - strand, within ABIE40_RS00255at 54.211 kb on + strandat 54.211 kb on + strandat 54.224 kb on + strandat 54.317 kb on - strandat 54.410 kb on + strand, within ABIE40_RS00260at 54.421 kb on + strand, within ABIE40_RS00260

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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51,657 - -2.0
51,664 + -1.9
51,707 - +0.7
51,715 - +0.0
51,739 + -1.5
51,739 + -0.4
51,740 - +1.0
51,769 + +0.6
51,769 + -0.5
51,769 + -0.5
51,769 + -1.0
51,815 + -0.2
51,815 + +1.4
52,591 + +0.6
52,591 + -0.8
52,591 + -1.0
52,592 - -4.6
52,592 - -4.5
52,592 - -4.1
52,592 - -5.0
52,592 - -4.9
52,592 - -3.0
52,592 - -2.8
52,592 - -1.6
52,592 - -2.3
52,793 + ABIE40_RS00245 0.23 -4.4
52,796 - ABIE40_RS00245 0.23 -3.1
52,826 + ABIE40_RS00245 0.27 -1.4
52,827 - ABIE40_RS00245 0.27 -3.1
52,839 + ABIE40_RS00245 0.28 -5.4
52,840 - ABIE40_RS00245 0.28 -4.3
53,068 - ABIE40_RS00245 0.55 -3.6
53,068 - ABIE40_RS00245 0.55 -1.5
53,078 + ABIE40_RS00245 0.56 -3.9
53,229 + ABIE40_RS00245 0.74 -3.2
53,229 + ABIE40_RS00245 0.74 -4.7
53,229 + ABIE40_RS00245 0.74 -2.6
53,229 + ABIE40_RS00245 0.74 -4.8
53,229 + ABIE40_RS00245 0.74 -5.1
53,229 + ABIE40_RS00245 0.74 -3.6
53,229 + ABIE40_RS00245 0.74 -4.3
53,229 + ABIE40_RS00245 0.74 +2.0
53,230 - ABIE40_RS00245 0.74 -0.0
53,230 - ABIE40_RS00245 0.74 +2.0
53,286 + ABIE40_RS00245 0.80 -4.8
53,286 + ABIE40_RS00245 0.80 -2.1
53,286 + ABIE40_RS00245 0.80 -5.3
53,287 - ABIE40_RS00245 0.80 -1.7
53,322 + ABIE40_RS00245 0.84 -6.1
53,322 + ABIE40_RS00245 0.84 -1.2
53,322 + ABIE40_RS00245 0.84 -3.6
53,322 + ABIE40_RS00245 0.84 -4.9
53,323 - ABIE40_RS00245 0.84 -1.5
53,323 - ABIE40_RS00245 0.84 -2.9
53,323 - ABIE40_RS00245 0.84 +1.0
53,323 - ABIE40_RS00245 0.84 -4.4
53,418 + -2.7
53,418 + -2.1
53,418 + -4.5
53,418 + -5.1
53,418 + -1.4
53,418 + -5.2
53,418 + -2.9
53,419 - -2.7
53,419 - -0.0
53,419 - -4.1
53,454 + -0.4
53,454 + -1.4
53,455 - +0.3
53,613 + ABIE40_RS00250 0.34 -1.5
53,613 + ABIE40_RS00250 0.34 +0.3
53,613 + ABIE40_RS00250 0.34 -0.8
53,613 + ABIE40_RS00250 0.34 -3.4
53,613 + ABIE40_RS00250 0.34 -0.8
53,613 + ABIE40_RS00250 0.34 -0.8
53,614 - ABIE40_RS00250 0.34 +0.5
53,614 - ABIE40_RS00250 0.34 +1.7
53,614 - ABIE40_RS00250 0.34 -0.3
53,616 + ABIE40_RS00250 0.34 +3.2
53,616 + ABIE40_RS00250 0.34 -0.9
53,616 + ABIE40_RS00250 0.34 +0.3
53,616 + ABIE40_RS00250 0.34 +0.5
53,617 - ABIE40_RS00250 0.35 +0.9
53,617 - ABIE40_RS00250 0.35 -0.6
53,617 - ABIE40_RS00250 0.35 -0.3
53,617 - ABIE40_RS00250 0.35 +0.8
53,796 + ABIE40_RS00250 0.83 -0.6
53,796 + ABIE40_RS00250 0.83 -0.8
53,797 - ABIE40_RS00250 0.83 -0.8
53,829 + +0.1
53,829 + +0.8
53,829 + +2.0
53,829 + -0.6
53,829 + -0.5
53,830 - -0.9
53,830 - +0.1
53,830 - -0.8
53,830 - +0.7
53,830 - -0.0
53,864 - +0.5
53,864 - +0.6
53,864 - +0.0
53,920 + -0.2
53,941 + +0.1
53,942 - +0.5
53,942 - -1.9
53,944 + +0.8
53,944 + +0.4
53,958 + +0.7
54,064 + ABIE40_RS00255 0.48 -0.7
54,065 - ABIE40_RS00255 0.48 -0.7
54,150 + ABIE40_RS00255 0.86 +0.7
54,151 - ABIE40_RS00255 0.86 +0.0
54,211 + -0.1
54,211 + -1.5
54,224 + +0.1
54,317 - +1.2
54,410 + ABIE40_RS00260 0.23 -1.2
54,421 + ABIE40_RS00260 0.25 -0.0

Or see this region's nucleotide sequence