Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS14970

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS14965 and UW163_RS14970 are separated by 54 nucleotidesUW163_RS14970 and UW163_RS14975 are separated by 90 nucleotides UW163_RS14965: UW163_RS14965 - dihydrolipoyl dehydrogenase, at 3,227,746 to 3,229,536 _RS14965 UW163_RS14970: UW163_RS14970 - MFS transporter, at 3,229,591 to 3,230,166 _RS14970 UW163_RS14975: UW163_RS14975 - dihydrolipoyllysine-residue acetyltransferase, at 3,230,257 to 3,231,924 _RS14975 Position (kb) 3229 3230 3231Strain fitness (log2 ratio) -1 0 1 2at 3229.497 kb on - strandat 3229.713 kb on - strand, within UW163_RS14970at 3229.800 kb on - strand, within UW163_RS14970at 3229.800 kb on - strand, within UW163_RS14970at 3229.809 kb on - strand, within UW163_RS14970at 3229.809 kb on - strandat 3230.261 kb on - strandat 3231.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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3,229,497 - -1.7
3,229,713 - UW163_RS14970 0.21 +0.1
3,229,800 - UW163_RS14970 0.36 -0.2
3,229,800 - UW163_RS14970 0.36 +0.2
3,229,809 - UW163_RS14970 0.38 -0.5
3,229,809 - +2.4
3,230,261 - -0.8
3,231,153 - +0.0

Or see this region's nucleotide sequence