Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS14655

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS14650 and UW163_RS14655 are separated by 170 nucleotidesUW163_RS14655 and UW163_RS14660 are separated by 165 nucleotidesUW163_RS14660 and UW163_RS14665 are separated by 29 nucleotides UW163_RS14650: UW163_RS14650 - endopeptidase La, at 3,157,952 to 3,160,372 _RS14650 UW163_RS14655: UW163_RS14655 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,160,543 to 3,161,817 _RS14655 UW163_RS14660: UW163_RS14660 - ATP-dependent Clp protease proteolytic subunit, at 3,161,983 to 3,162,636 _RS14660 UW163_RS14665: UW163_RS14665 - trigger factor, at 3,162,666 to 3,164,015 _RS14665 Position (kb) 3160 3161 3162Strain fitness (log2 ratio) -1 0 1at 3160.402 kb on - strandat 3160.426 kb on - strandat 3160.516 kb on - strandat 3162.812 kb on - strand, within UW163_RS14665

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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3,160,402 - +0.2
3,160,426 - +0.1
3,160,516 - -0.7
3,162,812 - UW163_RS14665 0.11 +0.1

Or see this region's nucleotide sequence