Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS13805 and UW163_RS13810 are separated by 147 nucleotides UW163_RS13810 and UW163_RS13815 are separated by 24 nucleotides UW163_RS13815 and UW163_RS13820 are separated by 19 nucleotides UW163_RS13820 and UW163_RS13825 are separated by 121 nucleotides
UW163_RS13805: UW163_RS13805 - phosphoenolpyruvate synthase, at 2,972,341 to 2,974,737
_RS13805
UW163_RS13810: UW163_RS13810 - NfeD family protein, at 2,974,885 to 2,975,313
_RS13810
UW163_RS13815: UW163_RS13815 - SPFH/Band 7/PHB domain protein, at 2,975,338 to 2,976,264
_RS13815
UW163_RS13820: UW163_RS13820 - SsrA-binding protein SmpB, at 2,976,284 to 2,976,730
_RS13820
UW163_RS13825: UW163_RS13825 - ubiquinone-binding protein, at 2,976,852 to 2,977,289
_RS13825
Position (kb) 2975
2976
2977 Strain fitness (log2 ratio) -1
0
1 at 2974.603 kb on + strand at 2974.604 kb on - strand at 2975.007 kb on + strand, within UW163_RS13810 at 2975.337 kb on + strand at 2975.337 kb on + strand at 2975.338 kb on - strand at 2975.485 kb on - strand, within UW163_RS13815 at 2975.516 kb on - strand, within UW163_RS13815 at 2975.517 kb on + strand, within UW163_RS13815 at 2975.517 kb on + strand, within UW163_RS13815 at 2975.517 kb on + strand, within UW163_RS13815 at 2975.518 kb on - strand, within UW163_RS13815 at 2975.518 kb on - strand, within UW163_RS13815 at 2975.518 kb on - strand at 2975.641 kb on + strand, within UW163_RS13815 at 2976.136 kb on + strand, within UW163_RS13815 at 2976.136 kb on + strand, within UW163_RS13815 at 2976.137 kb on - strand, within UW163_RS13815 at 2976.930 kb on + strand, within UW163_RS13825
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 2,974,603 + -1.3 2,974,604 - -1.0 2,975,007 + UW163_RS13810 0.28 -0.2 2,975,337 + +0.1 2,975,337 + +0.5 2,975,338 - +0.3 2,975,485 - UW163_RS13815 0.16 +0.9 2,975,516 - UW163_RS13815 0.19 -0.4 2,975,517 + UW163_RS13815 0.19 +0.0 2,975,517 + UW163_RS13815 0.19 -0.1 2,975,517 + UW163_RS13815 0.19 +0.4 2,975,518 - UW163_RS13815 0.19 +0.7 2,975,518 - UW163_RS13815 0.19 +0.4 2,975,518 - +0.4 2,975,641 + UW163_RS13815 0.33 -0.1 2,976,136 + UW163_RS13815 0.86 -0.9 2,976,136 + UW163_RS13815 0.86 +0.0 2,976,137 - UW163_RS13815 0.86 -0.1 2,976,930 + UW163_RS13825 0.18 -0.6
Or see this region's nucleotide sequence