Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS12315

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS12310 and UW163_RS12315 are separated by 10 nucleotidesUW163_RS12315 and UW163_RS12320 overlap by 4 nucleotidesUW163_RS12320 and UW163_RS12325 overlap by 4 nucleotides UW163_RS12310: UW163_RS12310 - alpha/beta hydrolase, at 2,639,875 to 2,640,792 _RS12310 UW163_RS12315: UW163_RS12315 - thiol-disulfide oxidoreductase DCC family protein, at 2,640,803 to 2,641,192 _RS12315 UW163_RS12320: UW163_RS12320 - DUF4166 domain-containing protein, at 2,641,189 to 2,641,731 _RS12320 UW163_RS12325: UW163_RS12325 - membrane protein, at 2,641,728 to 2,642,855 _RS12325 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -2 -1 0 1at 2639.923 kb on + strandat 2640.149 kb on - strand, within UW163_RS12310at 2640.181 kb on + strand, within UW163_RS12310at 2640.385 kb on + strand, within UW163_RS12310at 2640.385 kb on + strand, within UW163_RS12310at 2640.385 kb on + strand, within UW163_RS12310at 2640.385 kb on + strand, within UW163_RS12310at 2640.386 kb on - strand, within UW163_RS12310at 2640.386 kb on - strand, within UW163_RS12310at 2640.386 kb on - strand, within UW163_RS12310at 2640.897 kb on + strand, within UW163_RS12315at 2640.898 kb on - strandat 2641.065 kb on + strand, within UW163_RS12315at 2641.441 kb on - strand, within UW163_RS12320at 2641.441 kb on - strand, within UW163_RS12320at 2641.885 kb on + strand, within UW163_RS12325at 2641.885 kb on + strand, within UW163_RS12325at 2641.885 kb on + strand, within UW163_RS12325at 2641.886 kb on - strand, within UW163_RS12325at 2641.886 kb on - strand, within UW163_RS12325at 2641.886 kb on - strand, within UW163_RS12325at 2641.886 kb on - strand, within UW163_RS12325at 2641.886 kb on - strand, within UW163_RS12325

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,639,923 + -0.3
2,640,149 - UW163_RS12310 0.30 -0.3
2,640,181 + UW163_RS12310 0.33 -1.4
2,640,385 + UW163_RS12310 0.56 -1.9
2,640,385 + UW163_RS12310 0.56 -0.1
2,640,385 + UW163_RS12310 0.56 -1.4
2,640,385 + UW163_RS12310 0.56 -0.6
2,640,386 - UW163_RS12310 0.56 -0.8
2,640,386 - UW163_RS12310 0.56 +0.1
2,640,386 - UW163_RS12310 0.56 -0.4
2,640,897 + UW163_RS12315 0.24 +0.2
2,640,898 - +1.5
2,641,065 + UW163_RS12315 0.67 +0.3
2,641,441 - UW163_RS12320 0.46 +0.6
2,641,441 - UW163_RS12320 0.46 -0.5
2,641,885 + UW163_RS12325 0.14 -1.1
2,641,885 + UW163_RS12325 0.14 -1.1
2,641,885 + UW163_RS12325 0.14 +1.6
2,641,886 - UW163_RS12325 0.14 -0.2
2,641,886 - UW163_RS12325 0.14 +1.0
2,641,886 - UW163_RS12325 0.14 -0.2
2,641,886 - UW163_RS12325 0.14 -1.5
2,641,886 - UW163_RS12325 0.14 -0.3

Or see this region's nucleotide sequence