Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS08945 and UW163_RS08950 are separated by 165 nucleotides UW163_RS08950 and UW163_RS08955 are separated by 13 nucleotides UW163_RS08955 and UW163_RS08960 are separated by 173 nucleotides UW163_RS08960 and UW163_RS08965 are separated by 122 nucleotides UW163_RS08965 and UW163_RS08970 overlap by 1 nucleotides
UW163_RS08945: UW163_RS08945 - L-aspartate oxidase, at 1,926,309 to 1,927,910
_RS08945
UW163_RS08950: UW163_RS08950 - 50S ribosomal protein L33, at 1,928,076 to 1,928,246
_RS08950
UW163_RS08955: UW163_RS08955 - 50S ribosomal protein L28, at 1,928,260 to 1,928,493
_RS08955
UW163_RS08960: UW163_RS08960 - JAB domain-containing protein, at 1,928,667 to 1,929,341
_RS08960
UW163_RS08965: UW163_RS08965 - peptidylprolyl isomerase, at 1,929,464 to 1,929,943
_RS08965
UW163_RS08970: UW163_RS08970 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 1,929,943 to 1,930,917
_RS08970
Position (kb) 1928
1929
1930 Strain fitness (log2 ratio) -1
0
1 at 1927.675 kb on + strand, within UW163_RS08945 at 1927.675 kb on + strand, within UW163_RS08945 at 1927.985 kb on - strand at 1927.985 kb on - strand at 1928.098 kb on + strand, within UW163_RS08950 at 1928.098 kb on + strand, within UW163_RS08950 at 1928.098 kb on + strand, within UW163_RS08950 at 1928.763 kb on + strand, within UW163_RS08960 at 1928.763 kb on + strand, within UW163_RS08960 at 1928.764 kb on - strand, within UW163_RS08960 at 1928.764 kb on - strand, within UW163_RS08960 at 1928.764 kb on - strand, within UW163_RS08960 at 1929.106 kb on + strand, within UW163_RS08960 at 1929.106 kb on + strand, within UW163_RS08960 at 1929.107 kb on - strand, within UW163_RS08960 at 1929.415 kb on - strand at 1929.426 kb on + strand at 1929.426 kb on + strand at 1929.427 kb on - strand at 1929.427 kb on - strand at 1929.427 kb on - strand at 1929.427 kb on - strand at 1929.833 kb on + strand at 1929.833 kb on + strand, within UW163_RS08965
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 1,927,675 + UW163_RS08945 0.85 -1.3 1,927,675 + UW163_RS08945 0.85 -0.7 1,927,985 - +1.0 1,927,985 - +0.6 1,928,098 + UW163_RS08950 0.13 -1.0 1,928,098 + UW163_RS08950 0.13 +0.5 1,928,098 + UW163_RS08950 0.13 -0.8 1,928,763 + UW163_RS08960 0.14 -0.2 1,928,763 + UW163_RS08960 0.14 -0.2 1,928,764 - UW163_RS08960 0.14 -1.1 1,928,764 - UW163_RS08960 0.14 -0.1 1,928,764 - UW163_RS08960 0.14 -0.7 1,929,106 + UW163_RS08960 0.65 -0.2 1,929,106 + UW163_RS08960 0.65 -0.4 1,929,107 - UW163_RS08960 0.65 -0.2 1,929,415 - -0.9 1,929,426 + -0.6 1,929,426 + +0.6 1,929,427 - -0.3 1,929,427 - -0.1 1,929,427 - -0.0 1,929,427 - -0.7 1,929,833 + +0.8 1,929,833 + UW163_RS08965 0.77 +0.1
Or see this region's nucleotide sequence