Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS06970 and UW163_RS06975 are separated by 3 nucleotides UW163_RS06975 and UW163_RS06980 are separated by 0 nucleotides UW163_RS06980 and UW163_RS06985 are separated by 136 nucleotides
UW163_RS06970: UW163_RS06970 - cytochrome o ubiquinol oxidase subunit I, at 1,492,848 to 1,494,827
_RS06970
UW163_RS06975: UW163_RS06975 - cytochrome o ubiquinol oxidase subunit III, at 1,494,831 to 1,495,466
_RS06975
UW163_RS06980: UW163_RS06980 - cytochrome o ubiquinol oxidase subunit IV, at 1,495,467 to 1,495,835
_RS06980
UW163_RS06985: UW163_RS06985 - energy-dependent translational throttle protein EttA, at 1,495,972 to 1,497,639
_RS06985
Position (kb)
1495
1496 Strain fitness (log2 ratio)
-1
0
1 at 1494.496 kb on - strand, within UW163_RS06970 at 1494.799 kb on - strand at 1494.825 kb on + strand at 1495.054 kb on - strand, within UW163_RS06975 at 1495.098 kb on + strand, within UW163_RS06975 at 1495.464 kb on + strand at 1495.695 kb on + strand, within UW163_RS06980 at 1495.695 kb on + strand, within UW163_RS06980 at 1495.696 kb on - strand, within UW163_RS06980 at 1495.696 kb on - strand, within UW163_RS06980 at 1495.934 kb on - strand at 1495.934 kb on - strand at 1495.982 kb on - strand at 1496.629 kb on + strand, within UW163_RS06985 at 1496.702 kb on - strand, within UW163_RS06985 at 1496.702 kb on - strand, within UW163_RS06985 at 1496.702 kb on - strand, within UW163_RS06985
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 1,494,496 - UW163_RS06970 0.83 -0.2 1,494,799 - +0.1 1,494,825 + -0.4 1,495,054 - UW163_RS06975 0.35 +1.0 1,495,098 + UW163_RS06975 0.42 +0.2 1,495,464 + +0.7 1,495,695 + UW163_RS06980 0.62 +0.7 1,495,695 + UW163_RS06980 0.62 +1.2 1,495,696 - UW163_RS06980 0.62 +0.7 1,495,696 - UW163_RS06980 0.62 +0.2 1,495,934 - +0.0 1,495,934 - +0.4 1,495,982 - +0.4 1,496,629 + UW163_RS06985 0.39 +0.7 1,496,702 - UW163_RS06985 0.44 +0.2 1,496,702 - UW163_RS06985 0.44 -0.5 1,496,702 - UW163_RS06985 0.44 +0.7
Or see this region's nucleotide sequence