Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS03930 and UW163_RS03935 are separated by 410 nucleotides UW163_RS03935 and UW163_RS03940 are separated by 88 nucleotides UW163_RS03940 and UW163_RS03945 are separated by 107 nucleotides
UW163_RS03930: UW163_RS03930 - GTP-binding protein, at 823,075 to 824,163
_RS03930
UW163_RS03935: UW163_RS03935 - RNA polymerase-binding protein DksA, at 824,574 to 824,993
_RS03935
UW163_RS03940: UW163_RS03940 - GTP-binding protein, at 825,082 to 826,380
_RS03940
UW163_RS03945: UW163_RS03945 - ABC transporter substrate-binding protein, at 826,488 to 828,080
_RS03945
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 824.239 kb on - strand at 824.261 kb on + strand at 824.262 kb on - strand at 824.262 kb on - strand at 824.262 kb on - strand at 824.267 kb on - strand at 824.281 kb on + strand at 824.281 kb on + strand at 824.281 kb on + strand at 824.282 kb on - strand at 824.551 kb on + strand at 824.631 kb on + strand, within UW163_RS03935 at 824.631 kb on + strand, within UW163_RS03935 at 824.868 kb on + strand, within UW163_RS03935 at 825.377 kb on - strand, within UW163_RS03940 at 825.526 kb on + strand, within UW163_RS03940 at 825.925 kb on - strand, within UW163_RS03940 at 825.970 kb on + strand, within UW163_RS03940 at 826.381 kb on + strand at 826.381 kb on + strand at 826.381 kb on + strand at 826.382 kb on - strand at 826.382 kb on - strand at 826.382 kb on - strand at 826.830 kb on + strand, within UW163_RS03945 at 826.831 kb on - strand, within UW163_RS03945 at 826.875 kb on + strand, within UW163_RS03945 at 826.875 kb on + strand, within UW163_RS03945 at 826.876 kb on - strand, within UW163_RS03945 at 826.877 kb on + strand, within UW163_RS03945 at 826.884 kb on + strand, within UW163_RS03945 at 826.884 kb on + strand, within UW163_RS03945 at 826.885 kb on - strand, within UW163_RS03945 at 826.935 kb on - strand, within UW163_RS03945 at 826.935 kb on - strand, within UW163_RS03945 at 826.975 kb on + strand, within UW163_RS03945 at 826.975 kb on + strand, within UW163_RS03945 at 826.975 kb on + strand, within UW163_RS03945 at 826.975 kb on + strand, within UW163_RS03945 at 826.975 kb on + strand, within UW163_RS03945 at 826.987 kb on - strand, within UW163_RS03945 at 826.987 kb on - strand, within UW163_RS03945 at 826.987 kb on - strand, within UW163_RS03945 at 827.067 kb on + strand, within UW163_RS03945 at 827.067 kb on + strand, within UW163_RS03945 at 827.068 kb on - strand, within UW163_RS03945 at 827.068 kb on - strand, within UW163_RS03945 at 827.124 kb on + strand, within UW163_RS03945 at 827.125 kb on + strand, within UW163_RS03945 at 827.310 kb on + strand, within UW163_RS03945 at 827.310 kb on + strand, within UW163_RS03945 at 827.310 kb on + strand, within UW163_RS03945 at 827.310 kb on + strand, within UW163_RS03945 at 827.310 kb on + strand, within UW163_RS03945 at 827.311 kb on - strand, within UW163_RS03945 at 827.311 kb on - strand, within UW163_RS03945 at 827.311 kb on - strand, within UW163_RS03945
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 824,239 - +2.0 824,261 + -0.3 824,262 - +0.9 824,262 - +0.8 824,262 - +0.8 824,267 - -3.0 824,281 + +0.3 824,281 + -0.2 824,281 + -0.0 824,282 - -2.8 824,551 + +0.2 824,631 + UW163_RS03935 0.14 -1.4 824,631 + UW163_RS03935 0.14 -1.6 824,868 + UW163_RS03935 0.70 -1.7 825,377 - UW163_RS03940 0.23 +0.0 825,526 + UW163_RS03940 0.34 +1.2 825,925 - UW163_RS03940 0.65 -0.5 825,970 + UW163_RS03940 0.68 +0.2 826,381 + -0.0 826,381 + +0.2 826,381 + +0.0 826,382 - +1.1 826,382 - +0.6 826,382 - -0.6 826,830 + UW163_RS03945 0.21 +0.2 826,831 - UW163_RS03945 0.22 -0.3 826,875 + UW163_RS03945 0.24 -0.3 826,875 + UW163_RS03945 0.24 -0.0 826,876 - UW163_RS03945 0.24 +0.0 826,877 + UW163_RS03945 0.24 +1.7 826,884 + UW163_RS03945 0.25 -0.5 826,884 + UW163_RS03945 0.25 +0.4 826,885 - UW163_RS03945 0.25 +0.2 826,935 - UW163_RS03945 0.28 +0.3 826,935 - UW163_RS03945 0.28 +0.2 826,975 + UW163_RS03945 0.31 -0.4 826,975 + UW163_RS03945 0.31 -0.3 826,975 + UW163_RS03945 0.31 -0.5 826,975 + UW163_RS03945 0.31 +0.4 826,975 + UW163_RS03945 0.31 +0.3 826,987 - UW163_RS03945 0.31 -0.3 826,987 - UW163_RS03945 0.31 +0.8 826,987 - UW163_RS03945 0.31 -1.1 827,067 + UW163_RS03945 0.36 -0.3 827,067 + UW163_RS03945 0.36 -1.1 827,068 - UW163_RS03945 0.36 -0.2 827,068 - UW163_RS03945 0.36 +1.6 827,124 + UW163_RS03945 0.40 +0.3 827,125 + UW163_RS03945 0.40 -1.0 827,310 + UW163_RS03945 0.52 -0.0 827,310 + UW163_RS03945 0.52 -0.6 827,310 + UW163_RS03945 0.52 -1.0 827,310 + UW163_RS03945 0.52 +0.1 827,310 + UW163_RS03945 0.52 +0.4 827,311 - UW163_RS03945 0.52 +0.6 827,311 - UW163_RS03945 0.52 -0.6 827,311 - UW163_RS03945 0.52 +0.0
Or see this region's nucleotide sequence