Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS00755 and UW163_RS00760 are separated by 24 nucleotides UW163_RS00760 and UW163_RS00765 are separated by 47 nucleotides UW163_RS00765 and UW163_RS00770 are separated by 76 nucleotides
UW163_RS00755: UW163_RS00755 - 6,7-dimethyl-8-ribityllumazine synthase, at 147,263 to 147,760
_RS00755
UW163_RS00760: UW163_RS00760 - transcription antitermination factor NusB, at 147,785 to 148,252
_RS00760
UW163_RS00765: UW163_RS00765 - pyridoxal phosphate-dependent aminotransferase, at 148,300 to 149,484
_RS00765
UW163_RS00770: UW163_RS00770 - lytic transglycosylase, at 149,561 to 150,778
_RS00770
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 148.502 kb on - strand, within UW163_RS00765 at 148.684 kb on + strand, within UW163_RS00765 at 148.815 kb on - strand, within UW163_RS00765 at 148.942 kb on + strand, within UW163_RS00765 at 148.943 kb on - strand, within UW163_RS00765 at 148.943 kb on - strand, within UW163_RS00765 at 148.998 kb on + strand, within UW163_RS00765 at 149.168 kb on - strand, within UW163_RS00765 at 149.168 kb on - strand, within UW163_RS00765 at 149.168 kb on - strand, within UW163_RS00765 at 149.269 kb on + strand, within UW163_RS00765 at 149.269 kb on + strand, within UW163_RS00765 at 149.269 kb on + strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.270 kb on - strand, within UW163_RS00765 at 149.275 kb on + strand, within UW163_RS00765 at 149.389 kb on + strand at 149.389 kb on + strand at 149.390 kb on - strand at 149.404 kb on + strand at 149.404 kb on + strand at 149.405 kb on - strand at 149.405 kb on - strand at 149.405 kb on - strand at 149.964 kb on + strand, within UW163_RS00770 at 149.964 kb on + strand, within UW163_RS00770 at 149.969 kb on - strand, within UW163_RS00770 at 149.969 kb on - strand, within UW163_RS00770 at 150.108 kb on + strand, within UW163_RS00770 at 150.153 kb on + strand, within UW163_RS00770 at 150.168 kb on + strand, within UW163_RS00770 at 150.169 kb on - strand, within UW163_RS00770 at 150.169 kb on - strand, within UW163_RS00770 at 150.338 kb on + strand, within UW163_RS00770 at 150.338 kb on + strand, within UW163_RS00770 at 150.338 kb on + strand, within UW163_RS00770 at 150.339 kb on - strand, within UW163_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 148,502 - UW163_RS00765 0.17 +0.3 148,684 + UW163_RS00765 0.32 +0.5 148,815 - UW163_RS00765 0.43 -0.9 148,942 + UW163_RS00765 0.54 -0.4 148,943 - UW163_RS00765 0.54 +0.2 148,943 - UW163_RS00765 0.54 -1.8 148,998 + UW163_RS00765 0.59 +0.0 149,168 - UW163_RS00765 0.73 +0.1 149,168 - UW163_RS00765 0.73 +0.9 149,168 - UW163_RS00765 0.73 +0.6 149,269 + UW163_RS00765 0.82 -0.3 149,269 + UW163_RS00765 0.82 +0.3 149,269 + UW163_RS00765 0.82 -0.9 149,270 - UW163_RS00765 0.82 +0.3 149,270 - UW163_RS00765 0.82 +0.4 149,270 - UW163_RS00765 0.82 -1.1 149,270 - UW163_RS00765 0.82 +0.1 149,270 - UW163_RS00765 0.82 -0.1 149,270 - UW163_RS00765 0.82 -0.2 149,270 - UW163_RS00765 0.82 -0.5 149,270 - UW163_RS00765 0.82 +0.3 149,275 + UW163_RS00765 0.82 -0.3 149,389 + +0.4 149,389 + -0.0 149,390 - -1.1 149,404 + -0.2 149,404 + -0.3 149,405 - +0.2 149,405 - -0.2 149,405 - -0.6 149,964 + UW163_RS00770 0.33 -0.6 149,964 + UW163_RS00770 0.33 +1.1 149,969 - UW163_RS00770 0.33 -0.4 149,969 - UW163_RS00770 0.33 -0.3 150,108 + UW163_RS00770 0.45 +0.5 150,153 + UW163_RS00770 0.49 -1.0 150,168 + UW163_RS00770 0.50 +0.5 150,169 - UW163_RS00770 0.50 +1.2 150,169 - UW163_RS00770 0.50 -0.9 150,338 + UW163_RS00770 0.64 -0.4 150,338 + UW163_RS00770 0.64 +0.4 150,338 + UW163_RS00770 0.64 -0.4 150,339 - UW163_RS00770 0.64 -0.5
Or see this region's nucleotide sequence