Strain Fitness in Pseudomonas sp. RS175 around PFR28_05007

Experiment: a-Ketoglutaric carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05006 and PFR28_05007 are separated by 83 nucleotidesPFR28_05007 and PFR28_05008 overlap by 1 nucleotidesPFR28_05008 and PFR28_05009 overlap by 4 nucleotides PFR28_05006: PFR28_05006 - Penicillin-binding protein 1A, at 5,709,406 to 5,711,973 _05006 PFR28_05007: PFR28_05007 - Cell division protein FtsA, at 5,712,057 to 5,713,121 _05007 PFR28_05008: PFR28_05008 - hypothetical protein, at 5,713,121 to 5,713,687 _05008 PFR28_05009: PFR28_05009 - hypothetical protein, at 5,713,684 to 5,714,307 _05009 Position (kb) 5712 5713 5714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5711.061 kb on + strand, within PFR28_05006at 5711.062 kb on - strand, within PFR28_05006at 5711.062 kb on - strand, within PFR28_05006at 5711.063 kb on + strand, within PFR28_05006at 5711.063 kb on + strand, within PFR28_05006at 5711.063 kb on + strand, within PFR28_05006at 5711.063 kb on + strand, within PFR28_05006at 5711.064 kb on - strand, within PFR28_05006at 5711.064 kb on - strand, within PFR28_05006at 5711.064 kb on - strand, within PFR28_05006at 5711.064 kb on - strand, within PFR28_05006at 5711.064 kb on - strand, within PFR28_05006at 5711.096 kb on + strand, within PFR28_05006at 5711.096 kb on + strand, within PFR28_05006at 5711.096 kb on + strand, within PFR28_05006at 5711.096 kb on + strand, within PFR28_05006at 5711.097 kb on - strand, within PFR28_05006at 5711.097 kb on - strand, within PFR28_05006at 5711.097 kb on - strand, within PFR28_05006at 5711.097 kb on - strand, within PFR28_05006at 5711.097 kb on - strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.162 kb on + strand, within PFR28_05006at 5711.163 kb on - strand, within PFR28_05006at 5711.163 kb on - strand, within PFR28_05006at 5711.163 kb on - strand, within PFR28_05006at 5711.163 kb on - strand, within PFR28_05006at 5711.163 kb on - strand, within PFR28_05006at 5711.163 kb on - strand, within PFR28_05006at 5711.300 kb on + strand, within PFR28_05006at 5711.300 kb on + strand, within PFR28_05006at 5711.300 kb on + strand, within PFR28_05006at 5711.300 kb on + strand, within PFR28_05006at 5711.301 kb on - strand, within PFR28_05006at 5711.301 kb on - strand, within PFR28_05006at 5711.301 kb on - strand, within PFR28_05006at 5711.303 kb on + strand, within PFR28_05006at 5711.303 kb on + strand, within PFR28_05006at 5711.303 kb on + strand, within PFR28_05006at 5711.303 kb on + strand, within PFR28_05006at 5711.303 kb on + strand, within PFR28_05006at 5711.303 kb on + strand, within PFR28_05006at 5711.303 kb on + strand, within PFR28_05006at 5711.304 kb on - strand, within PFR28_05006at 5711.304 kb on - strand, within PFR28_05006at 5711.304 kb on - strand, within PFR28_05006at 5711.330 kb on + strand, within PFR28_05006at 5711.348 kb on + strand, within PFR28_05006at 5711.348 kb on + strand, within PFR28_05006at 5711.349 kb on - strand, within PFR28_05006at 5711.349 kb on - strand, within PFR28_05006at 5711.349 kb on - strand, within PFR28_05006at 5711.349 kb on - strand, within PFR28_05006at 5711.349 kb on - strand, within PFR28_05006at 5711.349 kb on - strand, within PFR28_05006at 5711.349 kb on - strand, within PFR28_05006at 5711.363 kb on + strand, within PFR28_05006at 5711.363 kb on + strand, within PFR28_05006at 5711.363 kb on + strand, within PFR28_05006at 5711.363 kb on + strand, within PFR28_05006at 5711.363 kb on + strand, within PFR28_05006at 5711.363 kb on + strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.364 kb on - strand, within PFR28_05006at 5711.511 kb on + strand, within PFR28_05006at 5711.512 kb on - strand, within PFR28_05006at 5711.570 kb on + strand, within PFR28_05006at 5711.700 kb on - strand, within PFR28_05006at 5711.763 kb on + strandat 5711.763 kb on + strandat 5711.763 kb on + strandat 5711.763 kb on + strandat 5711.764 kb on - strandat 5711.764 kb on - strandat 5711.764 kb on - strandat 5711.768 kb on + strandat 5711.768 kb on + strandat 5711.769 kb on - strandat 5711.769 kb on - strandat 5711.769 kb on - strandat 5711.769 kb on - strandat 5711.943 kb on + strandat 5711.943 kb on + strandat 5711.943 kb on + strandat 5711.943 kb on + strandat 5711.943 kb on + strandat 5711.943 kb on + strandat 5711.943 kb on + strandat 5711.944 kb on - strandat 5711.944 kb on - strandat 5711.944 kb on - strandat 5711.944 kb on - strandat 5711.944 kb on - strandat 5711.945 kb on + strandat 5711.945 kb on + strandat 5711.945 kb on + strandat 5711.946 kb on - strandat 5711.946 kb on - strandat 5711.946 kb on - strandat 5711.946 kb on - strandat 5712.016 kb on + strandat 5712.016 kb on + strandat 5712.016 kb on + strandat 5712.017 kb on - strandat 5712.017 kb on - strandat 5712.044 kb on + strandat 5712.044 kb on + strandat 5712.055 kb on + strandat 5712.055 kb on + strandat 5712.056 kb on - strandat 5712.061 kb on + strandat 5712.100 kb on + strandat 5712.100 kb on + strandat 5712.100 kb on + strandat 5712.100 kb on + strandat 5712.100 kb on + strandat 5712.101 kb on - strandat 5712.101 kb on - strandat 5712.101 kb on - strandat 5712.104 kb on + strandat 5712.104 kb on + strandat 5712.104 kb on + strandat 5712.104 kb on + strandat 5712.104 kb on + strandat 5712.105 kb on - strandat 5712.105 kb on - strandat 5712.105 kb on - strandat 5712.171 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.396 kb on + strand, within PFR28_05007at 5712.397 kb on - strand, within PFR28_05007at 5712.397 kb on - strand, within PFR28_05007at 5712.397 kb on - strand, within PFR28_05007at 5712.397 kb on - strand, within PFR28_05007at 5712.556 kb on + strand, within PFR28_05007at 5712.573 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.707 kb on + strand, within PFR28_05007at 5712.822 kb on + strand, within PFR28_05007at 5712.910 kb on - strand, within PFR28_05007at 5712.910 kb on - strand, within PFR28_05007at 5713.020 kb on - strandat 5713.218 kb on + strand, within PFR28_05008at 5713.228 kb on - strand, within PFR28_05008at 5713.245 kb on - strand, within PFR28_05008at 5713.245 kb on - strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.461 kb on - strand, within PFR28_05008at 5713.461 kb on - strand, within PFR28_05008at 5713.647 kb on + strandat 5713.746 kb on + strandat 5713.823 kb on - strand, within PFR28_05009at 5713.823 kb on - strand, within PFR28_05009at 5713.823 kb on - strand, within PFR28_05009at 5713.881 kb on + strand, within PFR28_05009at 5713.882 kb on - strand, within PFR28_05009at 5713.882 kb on - strand, within PFR28_05009at 5713.882 kb on - strand, within PFR28_05009at 5714.104 kb on + strand, within PFR28_05009at 5714.105 kb on - strand, within PFR28_05009at 5714.105 kb on - strand, within PFR28_05009

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric carbon 10 mM
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5,711,061 + PFR28_05006 0.64 +0.1
5,711,062 - PFR28_05006 0.64 +0.8
5,711,062 - PFR28_05006 0.64 -0.6
5,711,063 + PFR28_05006 0.65 +0.1
5,711,063 + PFR28_05006 0.65 -0.3
5,711,063 + PFR28_05006 0.65 +0.2
5,711,063 + PFR28_05006 0.65 -0.0
5,711,064 - PFR28_05006 0.65 -2.0
5,711,064 - PFR28_05006 0.65 +1.1
5,711,064 - PFR28_05006 0.65 +0.1
5,711,064 - PFR28_05006 0.65 -0.6
5,711,064 - PFR28_05006 0.65 +0.5
5,711,096 + PFR28_05006 0.66 +0.8
5,711,096 + PFR28_05006 0.66 +0.6
5,711,096 + PFR28_05006 0.66 -0.7
5,711,096 + PFR28_05006 0.66 +0.0
5,711,097 - PFR28_05006 0.66 -0.3
5,711,097 - PFR28_05006 0.66 -0.1
5,711,097 - PFR28_05006 0.66 -0.4
5,711,097 - PFR28_05006 0.66 +0.9
5,711,097 - PFR28_05006 0.66 -0.2
5,711,162 + PFR28_05006 0.68 +1.0
5,711,162 + PFR28_05006 0.68 +0.5
5,711,162 + PFR28_05006 0.68 +1.0
5,711,162 + PFR28_05006 0.68 +0.3
5,711,162 + PFR28_05006 0.68 +0.8
5,711,162 + PFR28_05006 0.68 +0.3
5,711,162 + PFR28_05006 0.68 -0.2
5,711,162 + PFR28_05006 0.68 +0.6
5,711,163 - PFR28_05006 0.68 +0.3
5,711,163 - PFR28_05006 0.68 +0.4
5,711,163 - PFR28_05006 0.68 +0.0
5,711,163 - PFR28_05006 0.68 +0.8
5,711,163 - PFR28_05006 0.68 +0.1
5,711,163 - PFR28_05006 0.68 +0.2
5,711,300 + PFR28_05006 0.74 +0.8
5,711,300 + PFR28_05006 0.74 +0.8
5,711,300 + PFR28_05006 0.74 +0.1
5,711,300 + PFR28_05006 0.74 +0.3
5,711,301 - PFR28_05006 0.74 -0.5
5,711,301 - PFR28_05006 0.74 +1.7
5,711,301 - PFR28_05006 0.74 +0.3
5,711,303 + PFR28_05006 0.74 +0.8
5,711,303 + PFR28_05006 0.74 +0.2
5,711,303 + PFR28_05006 0.74 +0.7
5,711,303 + PFR28_05006 0.74 +0.8
5,711,303 + PFR28_05006 0.74 +0.5
5,711,303 + PFR28_05006 0.74 +0.5
5,711,303 + PFR28_05006 0.74 +0.1
5,711,304 - PFR28_05006 0.74 +0.3
5,711,304 - PFR28_05006 0.74 -0.3
5,711,304 - PFR28_05006 0.74 -0.0
5,711,330 + PFR28_05006 0.75 -0.4
5,711,348 + PFR28_05006 0.76 +0.4
5,711,348 + PFR28_05006 0.76 +0.7
5,711,349 - PFR28_05006 0.76 +0.3
5,711,349 - PFR28_05006 0.76 -0.0
5,711,349 - PFR28_05006 0.76 +0.1
5,711,349 - PFR28_05006 0.76 -0.2
5,711,349 - PFR28_05006 0.76 -0.8
5,711,349 - PFR28_05006 0.76 -3.6
5,711,349 - PFR28_05006 0.76 -1.0
5,711,363 + PFR28_05006 0.76 +1.6
5,711,363 + PFR28_05006 0.76 +0.0
5,711,363 + PFR28_05006 0.76 -1.2
5,711,363 + PFR28_05006 0.76 +0.3
5,711,363 + PFR28_05006 0.76 +1.2
5,711,363 + PFR28_05006 0.76 +0.0
5,711,364 - PFR28_05006 0.76 -0.1
5,711,364 - PFR28_05006 0.76 -0.7
5,711,364 - PFR28_05006 0.76 +0.1
5,711,364 - PFR28_05006 0.76 +0.4
5,711,364 - PFR28_05006 0.76 +0.3
5,711,364 - PFR28_05006 0.76 -0.7
5,711,364 - PFR28_05006 0.76 +0.9
5,711,364 - PFR28_05006 0.76 -0.3
5,711,364 - PFR28_05006 0.76 -0.2
5,711,364 - PFR28_05006 0.76 +0.8
5,711,511 + PFR28_05006 0.82 +0.5
5,711,512 - PFR28_05006 0.82 -0.3
5,711,570 + PFR28_05006 0.84 +1.9
5,711,700 - PFR28_05006 0.89 +0.2
5,711,763 + +0.4
5,711,763 + +0.7
5,711,763 + +0.8
5,711,763 + -0.3
5,711,764 - -0.1
5,711,764 - -1.3
5,711,764 - +0.3
5,711,768 + -1.6
5,711,768 + +0.7
5,711,769 - +1.8
5,711,769 - -0.0
5,711,769 - +0.2
5,711,769 - +0.2
5,711,943 + +0.9
5,711,943 + +0.0
5,711,943 + +0.2
5,711,943 + +0.7
5,711,943 + -0.2
5,711,943 + +0.0
5,711,943 + +0.1
5,711,944 - +0.1
5,711,944 - -0.4
5,711,944 - -0.9
5,711,944 - +0.2
5,711,944 - -0.5
5,711,945 + -0.5
5,711,945 + -1.8
5,711,945 + -0.4
5,711,946 - +0.5
5,711,946 - -0.1
5,711,946 - -0.4
5,711,946 - +0.2
5,712,016 + +0.7
5,712,016 + -0.4
5,712,016 + -0.7
5,712,017 - -1.1
5,712,017 - -0.8
5,712,044 + -0.1
5,712,044 + +0.1
5,712,055 + +0.2
5,712,055 + -0.2
5,712,056 - +1.8
5,712,061 + +0.2
5,712,100 + +0.0
5,712,100 + -0.1
5,712,100 + +0.5
5,712,100 + +0.5
5,712,100 + -0.0
5,712,101 - -0.6
5,712,101 - -0.3
5,712,101 - +1.6
5,712,104 + -1.6
5,712,104 + -0.1
5,712,104 + +0.6
5,712,104 + +0.2
5,712,104 + -0.4
5,712,105 - +0.4
5,712,105 - -0.3
5,712,105 - -0.5
5,712,171 + PFR28_05007 0.11 +0.1
5,712,396 + PFR28_05007 0.32 +0.8
5,712,396 + PFR28_05007 0.32 -0.4
5,712,396 + PFR28_05007 0.32 -0.5
5,712,396 + PFR28_05007 0.32 +0.1
5,712,396 + PFR28_05007 0.32 +0.6
5,712,396 + PFR28_05007 0.32 +0.6
5,712,396 + PFR28_05007 0.32 +0.7
5,712,396 + PFR28_05007 0.32 -1.2
5,712,396 + PFR28_05007 0.32 -1.1
5,712,397 - PFR28_05007 0.32 -0.1
5,712,397 - PFR28_05007 0.32 -1.2
5,712,397 - PFR28_05007 0.32 +0.4
5,712,397 - PFR28_05007 0.32 -0.5
5,712,556 + PFR28_05007 0.47 -0.9
5,712,573 + PFR28_05007 0.48 -0.5
5,712,705 + PFR28_05007 0.61 -0.3
5,712,705 + PFR28_05007 0.61 +0.4
5,712,705 + PFR28_05007 0.61 +0.7
5,712,705 + PFR28_05007 0.61 -0.2
5,712,705 + PFR28_05007 0.61 -0.0
5,712,705 + PFR28_05007 0.61 +0.2
5,712,705 + PFR28_05007 0.61 -0.1
5,712,705 + PFR28_05007 0.61 +0.3
5,712,705 + PFR28_05007 0.61 -0.1
5,712,705 + PFR28_05007 0.61 +0.8
5,712,706 - PFR28_05007 0.61 -0.5
5,712,706 - PFR28_05007 0.61 +0.2
5,712,706 - PFR28_05007 0.61 -0.3
5,712,706 - PFR28_05007 0.61 -0.6
5,712,706 - PFR28_05007 0.61 -0.8
5,712,706 - PFR28_05007 0.61 +0.1
5,712,706 - PFR28_05007 0.61 -0.7
5,712,706 - PFR28_05007 0.61 +0.6
5,712,706 - PFR28_05007 0.61 +0.5
5,712,706 - PFR28_05007 0.61 +0.7
5,712,706 - PFR28_05007 0.61 -0.2
5,712,707 + PFR28_05007 0.61 -0.1
5,712,822 + PFR28_05007 0.72 +1.4
5,712,910 - PFR28_05007 0.80 -0.0
5,712,910 - PFR28_05007 0.80 -2.2
5,713,020 - -0.5
5,713,218 + PFR28_05008 0.17 -1.1
5,713,228 - PFR28_05008 0.19 -0.1
5,713,245 - PFR28_05008 0.22 -0.2
5,713,245 - PFR28_05008 0.22 +0.4
5,713,460 + PFR28_05008 0.60 +0.3
5,713,460 + PFR28_05008 0.60 -0.3
5,713,460 + PFR28_05008 0.60 -0.8
5,713,460 + PFR28_05008 0.60 -0.7
5,713,460 + PFR28_05008 0.60 -0.8
5,713,461 - PFR28_05008 0.60 +1.0
5,713,461 - PFR28_05008 0.60 +0.1
5,713,647 + +1.5
5,713,746 + +0.4
5,713,823 - PFR28_05009 0.22 +0.5
5,713,823 - PFR28_05009 0.22 +0.6
5,713,823 - PFR28_05009 0.22 -0.1
5,713,881 + PFR28_05009 0.32 -0.8
5,713,882 - PFR28_05009 0.32 -0.8
5,713,882 - PFR28_05009 0.32 -0.3
5,713,882 - PFR28_05009 0.32 -1.0
5,714,104 + PFR28_05009 0.67 -0.5
5,714,105 - PFR28_05009 0.67 +0.3
5,714,105 - PFR28_05009 0.67 -0.5

Or see this region's nucleotide sequence