Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4444

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4443 and EX28DRAFT_4444 overlap by 1 nucleotidesEX28DRAFT_4444 and EX28DRAFT_4445 are separated by 45 nucleotides EX28DRAFT_4443: EX28DRAFT_4443 - dihydroxy-acid dehydratase, at 6,825 to 8,675 _4443 EX28DRAFT_4444: EX28DRAFT_4444 - threonine ammonia-lyase, biosynthetic, long form, at 8,675 to 10,222 _4444 EX28DRAFT_4445: EX28DRAFT_4445 - Transcriptional regulator, at 10,268 to 11,158 _4445 Position (kb) 8 9 10 11Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 7.760 kb on + strand, within EX28DRAFT_4443at 7.761 kb on - strand, within EX28DRAFT_4443at 7.761 kb on - strand, within EX28DRAFT_4443at 7.785 kb on + strand, within EX28DRAFT_4443at 7.786 kb on - strand, within EX28DRAFT_4443at 7.791 kb on - strand, within EX28DRAFT_4443at 7.801 kb on + strand, within EX28DRAFT_4443at 7.802 kb on - strand, within EX28DRAFT_4443at 7.802 kb on - strand, within EX28DRAFT_4443at 8.064 kb on + strand, within EX28DRAFT_4443at 8.100 kb on + strand, within EX28DRAFT_4443at 8.188 kb on - strand, within EX28DRAFT_4443at 8.255 kb on + strand, within EX28DRAFT_4443at 8.256 kb on - strand, within EX28DRAFT_4443at 8.328 kb on - strand, within EX28DRAFT_4443at 8.661 kb on - strandat 8.753 kb on + strandat 8.753 kb on + strandat 8.754 kb on - strandat 9.299 kb on - strand, within EX28DRAFT_4444at 9.449 kb on + strand, within EX28DRAFT_4444at 9.475 kb on + strand, within EX28DRAFT_4444at 9.485 kb on - strand, within EX28DRAFT_4444at 9.778 kb on + strand, within EX28DRAFT_4444at 9.779 kb on - strand, within EX28DRAFT_4444at 9.811 kb on + strand, within EX28DRAFT_4444at 9.939 kb on - strand, within EX28DRAFT_4444at 10.054 kb on + strand, within EX28DRAFT_4444at 10.055 kb on - strand, within EX28DRAFT_4444at 10.166 kb on + strandat 10.238 kb on + strandat 10.303 kb on + strandat 10.501 kb on - strand, within EX28DRAFT_4445at 10.579 kb on + strand, within EX28DRAFT_4445at 10.580 kb on - strand, within EX28DRAFT_4445at 10.849 kb on + strand, within EX28DRAFT_4445at 10.851 kb on + strand, within EX28DRAFT_4445at 11.150 kb on + strandat 11.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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7,760 + EX28DRAFT_4443 0.51 -5.7
7,761 - EX28DRAFT_4443 0.51 -4.7
7,761 - EX28DRAFT_4443 0.51 -6.5
7,785 + EX28DRAFT_4443 0.52 -4.0
7,786 - EX28DRAFT_4443 0.52 -3.9
7,791 - EX28DRAFT_4443 0.52 -1.9
7,801 + EX28DRAFT_4443 0.53 -4.1
7,802 - EX28DRAFT_4443 0.53 -2.5
7,802 - EX28DRAFT_4443 0.53 -3.3
8,064 + EX28DRAFT_4443 0.67 -6.5
8,100 + EX28DRAFT_4443 0.69 -2.5
8,188 - EX28DRAFT_4443 0.74 -5.5
8,255 + EX28DRAFT_4443 0.77 -2.1
8,256 - EX28DRAFT_4443 0.77 -6.4
8,328 - EX28DRAFT_4443 0.81 -3.1
8,661 - -4.8
8,753 + -4.5
8,753 + -2.2
8,754 - -5.5
9,299 - EX28DRAFT_4444 0.40 -2.1
9,449 + EX28DRAFT_4444 0.50 -3.8
9,475 + EX28DRAFT_4444 0.52 -1.1
9,485 - EX28DRAFT_4444 0.52 -2.7
9,778 + EX28DRAFT_4444 0.71 -4.9
9,779 - EX28DRAFT_4444 0.71 -2.6
9,811 + EX28DRAFT_4444 0.73 -2.1
9,939 - EX28DRAFT_4444 0.82 -2.7
10,054 + EX28DRAFT_4444 0.89 -4.8
10,055 - EX28DRAFT_4444 0.89 -2.8
10,166 + -4.4
10,238 + +1.0
10,303 + -2.6
10,501 - EX28DRAFT_4445 0.26 -1.8
10,579 + EX28DRAFT_4445 0.35 -2.7
10,580 - EX28DRAFT_4445 0.35 -1.3
10,849 + EX28DRAFT_4445 0.65 -4.8
10,851 + EX28DRAFT_4445 0.65 -2.5
11,150 + -6.5
11,151 - -4.5

Or see this region's nucleotide sequence