Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4437

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4436 and EX28DRAFT_4437 are separated by 118 nucleotidesEX28DRAFT_4437 and EX28DRAFT_4438 are separated by 29 nucleotides EX28DRAFT_4436: EX28DRAFT_4436 - Transcriptional regulator, at 503 to 1,324 _4436 EX28DRAFT_4437: EX28DRAFT_4437 - Uncharacterized protein conserved in bacteria, at 1,443 to 1,781 _4437 EX28DRAFT_4438: EX28DRAFT_4438 - Mg chelatase-related protein, at 1,811 to 3,331 _4438 Position (kb) 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.469 kb on + strandat 0.469 kb on + strandat 0.577 kb on - strandat 0.786 kb on - strand, within EX28DRAFT_4436at 0.790 kb on - strand, within EX28DRAFT_4436at 0.829 kb on - strand, within EX28DRAFT_4436at 1.060 kb on + strand, within EX28DRAFT_4436at 1.061 kb on - strand, within EX28DRAFT_4436at 1.072 kb on + strand, within EX28DRAFT_4436at 1.087 kb on + strand, within EX28DRAFT_4436at 1.249 kb on - strandat 1.389 kb on + strandat 1.389 kb on + strandat 1.393 kb on + strandat 1.394 kb on - strandat 1.413 kb on - strandat 1.672 kb on + strand, within EX28DRAFT_4437at 1.683 kb on + strand, within EX28DRAFT_4437at 1.683 kb on + strand, within EX28DRAFT_4437at 1.684 kb on - strand, within EX28DRAFT_4437at 1.684 kb on - strand, within EX28DRAFT_4437at 1.761 kb on + strandat 1.813 kb on - strandat 1.958 kb on + strandat 1.958 kb on + strandat 1.959 kb on - strandat 2.061 kb on - strand, within EX28DRAFT_4438at 2.080 kb on - strand, within EX28DRAFT_4438at 2.114 kb on + strand, within EX28DRAFT_4438at 2.114 kb on + strand, within EX28DRAFT_4438at 2.225 kb on - strand, within EX28DRAFT_4438at 2.263 kb on + strand, within EX28DRAFT_4438at 2.331 kb on + strand, within EX28DRAFT_4438at 2.337 kb on - strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.360 kb on - strand, within EX28DRAFT_4438at 2.360 kb on - strand, within EX28DRAFT_4438at 2.360 kb on - strand, within EX28DRAFT_4438at 2.363 kb on + strand, within EX28DRAFT_4438at 2.364 kb on - strand, within EX28DRAFT_4438at 2.364 kb on - strand, within EX28DRAFT_4438at 2.364 kb on - strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.588 kb on + strand, within EX28DRAFT_4438at 2.589 kb on - strand, within EX28DRAFT_4438at 2.642 kb on + strand, within EX28DRAFT_4438at 2.642 kb on + strand, within EX28DRAFT_4438at 2.687 kb on + strand, within EX28DRAFT_4438at 2.688 kb on - strand, within EX28DRAFT_4438

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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469 + -0.1
469 + +0.1
577 - +0.5
786 - EX28DRAFT_4436 0.34 +1.2
790 - EX28DRAFT_4436 0.35 -0.6
829 - EX28DRAFT_4436 0.40 +0.0
1,060 + EX28DRAFT_4436 0.68 +0.2
1,061 - EX28DRAFT_4436 0.68 +0.5
1,072 + EX28DRAFT_4436 0.69 -0.9
1,087 + EX28DRAFT_4436 0.71 +0.0
1,249 - -0.7
1,389 + -0.0
1,389 + -3.3
1,393 + +1.0
1,394 - -1.7
1,413 - -0.9
1,672 + EX28DRAFT_4437 0.68 -1.5
1,683 + EX28DRAFT_4437 0.71 -0.0
1,683 + EX28DRAFT_4437 0.71 -2.9
1,684 - EX28DRAFT_4437 0.71 -0.6
1,684 - EX28DRAFT_4437 0.71 -0.6
1,761 + +0.6
1,813 - +0.5
1,958 + -0.2
1,958 + +0.4
1,959 - +0.1
2,061 - EX28DRAFT_4438 0.16 +0.8
2,080 - EX28DRAFT_4438 0.18 -0.3
2,114 + EX28DRAFT_4438 0.20 +0.5
2,114 + EX28DRAFT_4438 0.20 -0.4
2,225 - EX28DRAFT_4438 0.27 -0.2
2,263 + EX28DRAFT_4438 0.30 +1.2
2,331 + EX28DRAFT_4438 0.34 +0.4
2,337 - EX28DRAFT_4438 0.35 +0.5
2,359 + EX28DRAFT_4438 0.36 +0.7
2,359 + EX28DRAFT_4438 0.36 -0.1
2,359 + EX28DRAFT_4438 0.36 -0.6
2,359 + EX28DRAFT_4438 0.36 -0.8
2,359 + EX28DRAFT_4438 0.36 +0.3
2,360 - EX28DRAFT_4438 0.36 +0.4
2,360 - EX28DRAFT_4438 0.36 +1.3
2,360 - EX28DRAFT_4438 0.36 +1.1
2,363 + EX28DRAFT_4438 0.36 +0.5
2,364 - EX28DRAFT_4438 0.36 +0.4
2,364 - EX28DRAFT_4438 0.36 +0.1
2,364 - EX28DRAFT_4438 0.36 -0.1
2,584 + EX28DRAFT_4438 0.51 -0.5
2,584 + EX28DRAFT_4438 0.51 +0.9
2,584 + EX28DRAFT_4438 0.51 +0.5
2,586 + EX28DRAFT_4438 0.51 +0.2
2,586 + EX28DRAFT_4438 0.51 +0.0
2,586 + EX28DRAFT_4438 0.51 +0.9
2,586 + EX28DRAFT_4438 0.51 -0.3
2,586 + EX28DRAFT_4438 0.51 +0.4
2,587 - EX28DRAFT_4438 0.51 -0.8
2,587 - EX28DRAFT_4438 0.51 -1.5
2,587 - EX28DRAFT_4438 0.51 +1.6
2,588 + EX28DRAFT_4438 0.51 -0.4
2,589 - EX28DRAFT_4438 0.51 +1.5
2,642 + EX28DRAFT_4438 0.55 -0.3
2,642 + EX28DRAFT_4438 0.55 -0.8
2,687 + EX28DRAFT_4438 0.58 +0.8
2,688 - EX28DRAFT_4438 0.58 +0.8

Or see this region's nucleotide sequence