Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4420

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4419 and EX28DRAFT_4420 are separated by 88 nucleotidesEX28DRAFT_4420 and EX28DRAFT_4421 are separated by 9 nucleotidesEX28DRAFT_4421 and EX28DRAFT_4422 are separated by 74 nucleotides EX28DRAFT_4419: EX28DRAFT_4419 - acetylornithine deacetylase (ArgE), at 86,469 to 87,620 _4419 EX28DRAFT_4420: EX28DRAFT_4420 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 87,709 to 88,713 _4420 EX28DRAFT_4421: EX28DRAFT_4421 - N-acetylglutamate kinase (EC 2.7.2.8), at 88,723 to 89,496 _4421 EX28DRAFT_4422: EX28DRAFT_4422 - argininosuccinate lyase, at 89,571 to 90,944 _4422 Position (kb) 87 88 89Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 87.163 kb on + strand, within EX28DRAFT_4419at 87.211 kb on + strand, within EX28DRAFT_4419at 87.634 kb on + strandat 87.634 kb on + strandat 87.634 kb on + strandat 87.634 kb on + strandat 87.634 kb on + strandat 87.635 kb on - strandat 87.635 kb on - strandat 87.635 kb on - strandat 87.635 kb on - strandat 87.645 kb on - strandat 87.647 kb on + strandat 87.654 kb on - strandat 87.697 kb on + strandat 87.697 kb on + strandat 87.697 kb on + strandat 87.698 kb on - strandat 87.698 kb on - strandat 87.718 kb on - strandat 87.761 kb on + strandat 87.762 kb on - strandat 87.766 kb on + strandat 87.786 kb on + strandat 87.787 kb on - strandat 87.787 kb on - strandat 88.132 kb on - strand, within EX28DRAFT_4420at 88.327 kb on + strand, within EX28DRAFT_4420at 88.635 kb on - strandat 88.674 kb on + strandat 88.675 kb on - strandat 88.707 kb on + strandat 88.737 kb on + strandat 88.754 kb on + strandat 89.048 kb on + strand, within EX28DRAFT_4421at 89.484 kb on + strandat 89.484 kb on + strandat 89.490 kb on - strandat 89.515 kb on + strandat 89.549 kb on + strandat 89.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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87,163 + EX28DRAFT_4419 0.60 -4.0
87,211 + EX28DRAFT_4419 0.64 -4.1
87,634 + +0.6
87,634 + +0.2
87,634 + +0.4
87,634 + -1.0
87,634 + +0.4
87,635 - -1.4
87,635 - -2.1
87,635 - -1.7
87,635 - -0.1
87,645 - -2.2
87,647 + -0.0
87,654 - -0.9
87,697 + +0.0
87,697 + +0.3
87,697 + -3.7
87,698 - -3.2
87,698 - -4.4
87,718 - -5.8
87,761 + -3.8
87,762 - -5.7
87,766 + -6.1
87,786 + -3.7
87,787 - -5.0
87,787 - -2.7
88,132 - EX28DRAFT_4420 0.42 -3.6
88,327 + EX28DRAFT_4420 0.61 -2.6
88,635 - -3.7
88,674 + -4.7
88,675 - -2.0
88,707 + -1.0
88,737 + -3.1
88,754 + -1.7
89,048 + EX28DRAFT_4421 0.42 -4.7
89,484 + -2.1
89,484 + -4.1
89,490 - -4.6
89,515 + +0.2
89,549 + +1.0
89,670 - -3.1

Or see this region's nucleotide sequence