Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4412 and EX28DRAFT_4413 are separated by 226 nucleotides EX28DRAFT_4413 and EX28DRAFT_4414 are separated by 147 nucleotides
EX28DRAFT_4412: EX28DRAFT_4412 - aspartate kinase (EC 2.7.2.4), at 74,823 to 77,255
_4412
EX28DRAFT_4413: EX28DRAFT_4413 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 77,482 to 78,369
_4413
EX28DRAFT_4414: EX28DRAFT_4414 - catalase/peroxidase HPI, at 78,517 to 80,697
_4414
Position (kb)
77
78
79 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 76.494 kb on + strand, within EX28DRAFT_4412 at 76.559 kb on + strand, within EX28DRAFT_4412 at 76.565 kb on + strand, within EX28DRAFT_4412 at 76.569 kb on + strand, within EX28DRAFT_4412 at 76.618 kb on - strand, within EX28DRAFT_4412 at 76.618 kb on - strand, within EX28DRAFT_4412 at 76.798 kb on + strand, within EX28DRAFT_4412 at 76.840 kb on + strand, within EX28DRAFT_4412 at 76.840 kb on + strand, within EX28DRAFT_4412 at 76.841 kb on - strand, within EX28DRAFT_4412 at 76.847 kb on + strand, within EX28DRAFT_4412 at 76.991 kb on - strand, within EX28DRAFT_4412 at 76.991 kb on - strand, within EX28DRAFT_4412 at 77.034 kb on + strand at 77.338 kb on + strand at 77.338 kb on + strand at 77.338 kb on + strand at 77.372 kb on + strand at 77.372 kb on + strand at 77.372 kb on + strand at 77.373 kb on - strand at 77.376 kb on + strand at 77.376 kb on + strand at 77.376 kb on + strand at 77.377 kb on - strand at 77.476 kb on + strand at 77.476 kb on + strand at 77.477 kb on - strand at 77.477 kb on - strand at 77.481 kb on + strand at 77.482 kb on - strand at 77.482 kb on - strand at 77.482 kb on - strand at 77.482 kb on - strand at 77.625 kb on + strand, within EX28DRAFT_4413 at 77.660 kb on - strand, within EX28DRAFT_4413 at 77.721 kb on + strand, within EX28DRAFT_4413 at 77.798 kb on - strand, within EX28DRAFT_4413 at 77.821 kb on - strand, within EX28DRAFT_4413 at 77.821 kb on - strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.872 kb on + strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 77.873 kb on - strand, within EX28DRAFT_4413 at 78.052 kb on + strand, within EX28DRAFT_4413 at 78.053 kb on - strand, within EX28DRAFT_4413 at 78.053 kb on - strand, within EX28DRAFT_4413 at 78.126 kb on + strand, within EX28DRAFT_4413 at 78.127 kb on - strand, within EX28DRAFT_4413 at 78.156 kb on + strand, within EX28DRAFT_4413 at 78.247 kb on - strand, within EX28DRAFT_4413 at 78.304 kb on + strand at 78.305 kb on - strand at 78.305 kb on - strand at 78.305 kb on - strand at 78.307 kb on - strand at 78.331 kb on + strand at 78.346 kb on - strand at 78.346 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.429 kb on + strand at 78.459 kb on - strand at 78.460 kb on + strand at 78.465 kb on + strand at 78.466 kb on - strand at 78.466 kb on - strand at 78.471 kb on + strand at 78.479 kb on + strand at 78.479 kb on + strand at 78.479 kb on + strand at 78.479 kb on + strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.480 kb on - strand at 78.482 kb on - strand at 78.493 kb on - strand at 78.493 kb on - strand at 78.501 kb on - strand at 78.501 kb on - strand at 78.631 kb on - strand at 78.727 kb on + strand at 78.727 kb on + strand at 78.847 kb on + strand, within EX28DRAFT_4414 at 78.963 kb on + strand, within EX28DRAFT_4414 at 78.974 kb on - strand, within EX28DRAFT_4414 at 79.192 kb on + strand, within EX28DRAFT_4414 at 79.193 kb on - strand, within EX28DRAFT_4414 at 79.193 kb on - strand, within EX28DRAFT_4414 at 79.193 kb on - strand, within EX28DRAFT_4414
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 76,494 + EX28DRAFT_4412 0.69 +0.4 76,559 + EX28DRAFT_4412 0.71 -1.3 76,565 + EX28DRAFT_4412 0.72 +0.5 76,569 + EX28DRAFT_4412 0.72 +1.3 76,618 - EX28DRAFT_4412 0.74 +0.2 76,618 - EX28DRAFT_4412 0.74 +0.1 76,798 + EX28DRAFT_4412 0.81 +0.3 76,840 + EX28DRAFT_4412 0.83 +0.9 76,840 + EX28DRAFT_4412 0.83 -0.8 76,841 - EX28DRAFT_4412 0.83 +0.1 76,847 + EX28DRAFT_4412 0.83 +0.3 76,991 - EX28DRAFT_4412 0.89 -0.4 76,991 - EX28DRAFT_4412 0.89 +0.3 77,034 + +0.1 77,338 + -0.5 77,338 + -0.4 77,338 + -0.3 77,372 + -0.6 77,372 + -0.0 77,372 + -1.1 77,373 - -1.1 77,376 + +0.1 77,376 + +0.6 77,376 + -1.2 77,377 - -2.7 77,476 + -1.3 77,476 + -0.5 77,477 - -3.0 77,477 - -0.8 77,481 + -1.2 77,482 - -1.2 77,482 - -0.5 77,482 - -2.0 77,482 - -0.9 77,625 + EX28DRAFT_4413 0.16 -1.3 77,660 - EX28DRAFT_4413 0.20 -1.7 77,721 + EX28DRAFT_4413 0.27 +0.1 77,798 - EX28DRAFT_4413 0.36 -0.3 77,821 - EX28DRAFT_4413 0.38 -1.1 77,821 - EX28DRAFT_4413 0.38 -1.5 77,872 + EX28DRAFT_4413 0.44 +0.2 77,872 + EX28DRAFT_4413 0.44 -4.7 77,872 + EX28DRAFT_4413 0.44 -1.4 77,872 + EX28DRAFT_4413 0.44 -2.0 77,872 + EX28DRAFT_4413 0.44 -0.7 77,872 + EX28DRAFT_4413 0.44 -1.0 77,873 - EX28DRAFT_4413 0.44 -4.5 77,873 - EX28DRAFT_4413 0.44 -1.1 77,873 - EX28DRAFT_4413 0.44 -1.2 77,873 - EX28DRAFT_4413 0.44 -1.9 77,873 - EX28DRAFT_4413 0.44 -2.9 77,873 - EX28DRAFT_4413 0.44 -1.3 77,873 - EX28DRAFT_4413 0.44 -1.6 78,052 + EX28DRAFT_4413 0.64 -0.4 78,053 - EX28DRAFT_4413 0.64 -1.2 78,053 - EX28DRAFT_4413 0.64 -1.0 78,126 + EX28DRAFT_4413 0.73 -1.2 78,127 - EX28DRAFT_4413 0.73 -1.7 78,156 + EX28DRAFT_4413 0.76 -2.1 78,247 - EX28DRAFT_4413 0.86 -2.3 78,304 + -1.2 78,305 - +1.7 78,305 - -4.8 78,305 - -0.1 78,307 - -2.1 78,331 + -2.7 78,346 - +0.3 78,346 - -0.4 78,371 - -0.3 78,371 - -0.4 78,371 - -2.2 78,371 - -0.6 78,429 + -0.1 78,459 - +0.1 78,460 + -0.7 78,465 + -0.5 78,466 - +0.2 78,466 - -0.3 78,471 + -0.2 78,479 + -1.3 78,479 + -1.1 78,479 + +0.8 78,479 + +0.3 78,480 - -1.6 78,480 - +1.8 78,480 - +0.7 78,480 - -1.5 78,480 - +0.3 78,480 - -3.0 78,482 - +1.2 78,493 - +0.2 78,493 - +1.6 78,501 - +1.0 78,501 - +0.3 78,631 - +0.1 78,727 + -1.7 78,727 + +0.9 78,847 + EX28DRAFT_4414 0.15 +0.5 78,963 + EX28DRAFT_4414 0.20 +0.2 78,974 - EX28DRAFT_4414 0.21 -0.2 79,192 + EX28DRAFT_4414 0.31 -2.2 79,193 - EX28DRAFT_4414 0.31 +0.2 79,193 - EX28DRAFT_4414 0.31 -0.2 79,193 - EX28DRAFT_4414 0.31 -0.4
Or see this region's nucleotide sequence