Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4413

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4412 and EX28DRAFT_4413 are separated by 226 nucleotidesEX28DRAFT_4413 and EX28DRAFT_4414 are separated by 147 nucleotides EX28DRAFT_4412: EX28DRAFT_4412 - aspartate kinase (EC 2.7.2.4), at 74,823 to 77,255 _4412 EX28DRAFT_4413: EX28DRAFT_4413 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 77,482 to 78,369 _4413 EX28DRAFT_4414: EX28DRAFT_4414 - catalase/peroxidase HPI, at 78,517 to 80,697 _4414 Position (kb) 77 78 79Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 76.494 kb on + strand, within EX28DRAFT_4412at 76.559 kb on + strand, within EX28DRAFT_4412at 76.565 kb on + strand, within EX28DRAFT_4412at 76.569 kb on + strand, within EX28DRAFT_4412at 76.618 kb on - strand, within EX28DRAFT_4412at 76.618 kb on - strand, within EX28DRAFT_4412at 76.798 kb on + strand, within EX28DRAFT_4412at 76.840 kb on + strand, within EX28DRAFT_4412at 76.840 kb on + strand, within EX28DRAFT_4412at 76.841 kb on - strand, within EX28DRAFT_4412at 76.847 kb on + strand, within EX28DRAFT_4412at 76.991 kb on - strand, within EX28DRAFT_4412at 76.991 kb on - strand, within EX28DRAFT_4412at 77.034 kb on + strandat 77.338 kb on + strandat 77.338 kb on + strandat 77.338 kb on + strandat 77.372 kb on + strandat 77.372 kb on + strandat 77.372 kb on + strandat 77.373 kb on - strandat 77.376 kb on + strandat 77.376 kb on + strandat 77.376 kb on + strandat 77.377 kb on - strandat 77.476 kb on + strandat 77.476 kb on + strandat 77.477 kb on - strandat 77.477 kb on - strandat 77.481 kb on + strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.482 kb on - strandat 77.625 kb on + strand, within EX28DRAFT_4413at 77.660 kb on - strand, within EX28DRAFT_4413at 77.721 kb on + strand, within EX28DRAFT_4413at 77.798 kb on - strand, within EX28DRAFT_4413at 77.821 kb on - strand, within EX28DRAFT_4413at 77.821 kb on - strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.872 kb on + strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 77.873 kb on - strand, within EX28DRAFT_4413at 78.052 kb on + strand, within EX28DRAFT_4413at 78.053 kb on - strand, within EX28DRAFT_4413at 78.053 kb on - strand, within EX28DRAFT_4413at 78.126 kb on + strand, within EX28DRAFT_4413at 78.127 kb on - strand, within EX28DRAFT_4413at 78.156 kb on + strand, within EX28DRAFT_4413at 78.247 kb on - strand, within EX28DRAFT_4413at 78.304 kb on + strandat 78.305 kb on - strandat 78.305 kb on - strandat 78.305 kb on - strandat 78.307 kb on - strandat 78.331 kb on + strandat 78.346 kb on - strandat 78.346 kb on - strandat 78.371 kb on - strandat 78.371 kb on - strandat 78.371 kb on - strandat 78.371 kb on - strandat 78.429 kb on + strandat 78.459 kb on - strandat 78.460 kb on + strandat 78.465 kb on + strandat 78.466 kb on - strandat 78.466 kb on - strandat 78.471 kb on + strandat 78.479 kb on + strandat 78.479 kb on + strandat 78.479 kb on + strandat 78.479 kb on + strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.480 kb on - strandat 78.482 kb on - strandat 78.493 kb on - strandat 78.493 kb on - strandat 78.501 kb on - strandat 78.501 kb on - strandat 78.631 kb on - strandat 78.727 kb on + strandat 78.727 kb on + strandat 78.847 kb on + strand, within EX28DRAFT_4414at 78.963 kb on + strand, within EX28DRAFT_4414at 78.974 kb on - strand, within EX28DRAFT_4414at 79.192 kb on + strand, within EX28DRAFT_4414at 79.193 kb on - strand, within EX28DRAFT_4414at 79.193 kb on - strand, within EX28DRAFT_4414at 79.193 kb on - strand, within EX28DRAFT_4414

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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76,494 + EX28DRAFT_4412 0.69 +0.4
76,559 + EX28DRAFT_4412 0.71 -1.3
76,565 + EX28DRAFT_4412 0.72 +0.5
76,569 + EX28DRAFT_4412 0.72 +1.3
76,618 - EX28DRAFT_4412 0.74 +0.2
76,618 - EX28DRAFT_4412 0.74 +0.1
76,798 + EX28DRAFT_4412 0.81 +0.3
76,840 + EX28DRAFT_4412 0.83 +0.9
76,840 + EX28DRAFT_4412 0.83 -0.8
76,841 - EX28DRAFT_4412 0.83 +0.1
76,847 + EX28DRAFT_4412 0.83 +0.3
76,991 - EX28DRAFT_4412 0.89 -0.4
76,991 - EX28DRAFT_4412 0.89 +0.3
77,034 + +0.1
77,338 + -0.5
77,338 + -0.4
77,338 + -0.3
77,372 + -0.6
77,372 + -0.0
77,372 + -1.1
77,373 - -1.1
77,376 + +0.1
77,376 + +0.6
77,376 + -1.2
77,377 - -2.7
77,476 + -1.3
77,476 + -0.5
77,477 - -3.0
77,477 - -0.8
77,481 + -1.2
77,482 - -1.2
77,482 - -0.5
77,482 - -2.0
77,482 - -0.9
77,625 + EX28DRAFT_4413 0.16 -1.3
77,660 - EX28DRAFT_4413 0.20 -1.7
77,721 + EX28DRAFT_4413 0.27 +0.1
77,798 - EX28DRAFT_4413 0.36 -0.3
77,821 - EX28DRAFT_4413 0.38 -1.1
77,821 - EX28DRAFT_4413 0.38 -1.5
77,872 + EX28DRAFT_4413 0.44 +0.2
77,872 + EX28DRAFT_4413 0.44 -4.7
77,872 + EX28DRAFT_4413 0.44 -1.4
77,872 + EX28DRAFT_4413 0.44 -2.0
77,872 + EX28DRAFT_4413 0.44 -0.7
77,872 + EX28DRAFT_4413 0.44 -1.0
77,873 - EX28DRAFT_4413 0.44 -4.5
77,873 - EX28DRAFT_4413 0.44 -1.1
77,873 - EX28DRAFT_4413 0.44 -1.2
77,873 - EX28DRAFT_4413 0.44 -1.9
77,873 - EX28DRAFT_4413 0.44 -2.9
77,873 - EX28DRAFT_4413 0.44 -1.3
77,873 - EX28DRAFT_4413 0.44 -1.6
78,052 + EX28DRAFT_4413 0.64 -0.4
78,053 - EX28DRAFT_4413 0.64 -1.2
78,053 - EX28DRAFT_4413 0.64 -1.0
78,126 + EX28DRAFT_4413 0.73 -1.2
78,127 - EX28DRAFT_4413 0.73 -1.7
78,156 + EX28DRAFT_4413 0.76 -2.1
78,247 - EX28DRAFT_4413 0.86 -2.3
78,304 + -1.2
78,305 - +1.7
78,305 - -4.8
78,305 - -0.1
78,307 - -2.1
78,331 + -2.7
78,346 - +0.3
78,346 - -0.4
78,371 - -0.3
78,371 - -0.4
78,371 - -2.2
78,371 - -0.6
78,429 + -0.1
78,459 - +0.1
78,460 + -0.7
78,465 + -0.5
78,466 - +0.2
78,466 - -0.3
78,471 + -0.2
78,479 + -1.3
78,479 + -1.1
78,479 + +0.8
78,479 + +0.3
78,480 - -1.6
78,480 - +1.8
78,480 - +0.7
78,480 - -1.5
78,480 - +0.3
78,480 - -3.0
78,482 - +1.2
78,493 - +0.2
78,493 - +1.6
78,501 - +1.0
78,501 - +0.3
78,631 - +0.1
78,727 + -1.7
78,727 + +0.9
78,847 + EX28DRAFT_4414 0.15 +0.5
78,963 + EX28DRAFT_4414 0.20 +0.2
78,974 - EX28DRAFT_4414 0.21 -0.2
79,192 + EX28DRAFT_4414 0.31 -2.2
79,193 - EX28DRAFT_4414 0.31 +0.2
79,193 - EX28DRAFT_4414 0.31 -0.2
79,193 - EX28DRAFT_4414 0.31 -0.4

Or see this region's nucleotide sequence