Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4353 and EX28DRAFT_4354 are separated by 51 nucleotides EX28DRAFT_4354 and EX28DRAFT_4355 are separated by 74 nucleotides EX28DRAFT_4355 and EX28DRAFT_4356 are separated by 43 nucleotides
EX28DRAFT_4353: EX28DRAFT_4353 - GTP-binding protein TypA/BipA, at 16,013 to 17,836
_4353
EX28DRAFT_4354: EX28DRAFT_4354 - Oligogalacturonate-specific porin protein (KdgM), at 17,888 to 18,574
_4354
EX28DRAFT_4355: EX28DRAFT_4355 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 18,649 to 20,073
_4355
EX28DRAFT_4356: EX28DRAFT_4356 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 20,117 to 21,499
_4356
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 17.850 kb on + strand at 17.910 kb on - strand at 17.937 kb on + strand at 17.938 kb on - strand at 17.938 kb on - strand at 17.938 kb on - strand at 17.998 kb on + strand, within EX28DRAFT_4354 at 18.000 kb on + strand, within EX28DRAFT_4354 at 18.000 kb on + strand, within EX28DRAFT_4354 at 18.093 kb on + strand, within EX28DRAFT_4354 at 18.094 kb on - strand, within EX28DRAFT_4354 at 18.155 kb on - strand, within EX28DRAFT_4354 at 18.171 kb on + strand, within EX28DRAFT_4354 at 18.187 kb on - strand, within EX28DRAFT_4354 at 18.187 kb on - strand, within EX28DRAFT_4354 at 18.200 kb on - strand, within EX28DRAFT_4354 at 18.200 kb on - strand, within EX28DRAFT_4354 at 18.202 kb on - strand, within EX28DRAFT_4354 at 18.250 kb on + strand, within EX28DRAFT_4354 at 18.251 kb on - strand, within EX28DRAFT_4354 at 18.251 kb on - strand, within EX28DRAFT_4354 at 18.254 kb on + strand, within EX28DRAFT_4354 at 18.255 kb on - strand, within EX28DRAFT_4354 at 18.255 kb on - strand, within EX28DRAFT_4354 at 18.356 kb on + strand, within EX28DRAFT_4354 at 18.356 kb on + strand, within EX28DRAFT_4354 at 18.356 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.366 kb on + strand, within EX28DRAFT_4354 at 18.367 kb on - strand, within EX28DRAFT_4354 at 18.401 kb on - strand, within EX28DRAFT_4354 at 18.403 kb on - strand, within EX28DRAFT_4354 at 18.442 kb on + strand, within EX28DRAFT_4354 at 18.490 kb on - strand, within EX28DRAFT_4354 at 18.510 kb on + strand at 18.510 kb on + strand at 18.587 kb on + strand at 18.587 kb on + strand at 18.588 kb on - strand at 18.588 kb on - strand at 18.644 kb on + strand at 18.644 kb on + strand at 18.645 kb on - strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.672 kb on + strand at 18.686 kb on - strand at 18.767 kb on + strand at 18.836 kb on - strand, within EX28DRAFT_4355 at 18.878 kb on + strand, within EX28DRAFT_4355 at 18.878 kb on + strand, within EX28DRAFT_4355 at 18.878 kb on + strand, within EX28DRAFT_4355 at 18.898 kb on - strand, within EX28DRAFT_4355 at 18.960 kb on - strand, within EX28DRAFT_4355 at 19.039 kb on - strand, within EX28DRAFT_4355 at 19.042 kb on - strand, within EX28DRAFT_4355 at 19.042 kb on - strand, within EX28DRAFT_4355 at 19.274 kb on + strand, within EX28DRAFT_4355 at 19.274 kb on + strand, within EX28DRAFT_4355 at 19.283 kb on + strand, within EX28DRAFT_4355 at 19.284 kb on - strand, within EX28DRAFT_4355 at 19.284 kb on - strand, within EX28DRAFT_4355 at 19.286 kb on + strand, within EX28DRAFT_4355 at 19.286 kb on + strand, within EX28DRAFT_4355 at 19.404 kb on + strand, within EX28DRAFT_4355 at 19.405 kb on - strand, within EX28DRAFT_4355 at 19.405 kb on - strand, within EX28DRAFT_4355 at 19.431 kb on - strand, within EX28DRAFT_4355 at 19.431 kb on - strand, within EX28DRAFT_4355 at 19.451 kb on + strand, within EX28DRAFT_4355 at 19.683 kb on - strand, within EX28DRAFT_4355 at 19.919 kb on + strand, within EX28DRAFT_4355 at 19.919 kb on + strand, within EX28DRAFT_4355 at 19.920 kb on - strand, within EX28DRAFT_4355 at 19.920 kb on - strand, within EX28DRAFT_4355 at 20.039 kb on - strand at 20.064 kb on + strand at 20.065 kb on - strand at 20.065 kb on - strand at 20.065 kb on - strand at 20.065 kb on - strand at 20.065 kb on - strand at 20.107 kb on - strand at 20.119 kb on - strand at 20.126 kb on - strand at 20.126 kb on - strand at 20.163 kb on + strand at 20.163 kb on + strand at 20.163 kb on + strand at 20.163 kb on + strand at 20.163 kb on + strand at 20.164 kb on - strand at 20.164 kb on - strand at 20.164 kb on - strand at 20.164 kb on - strand at 20.164 kb on - strand at 20.164 kb on - strand at 20.185 kb on - strand at 20.237 kb on - strand at 20.237 kb on - strand at 20.237 kb on - strand at 20.240 kb on + strand at 20.241 kb on - strand at 20.241 kb on - strand at 20.349 kb on - strand, within EX28DRAFT_4356 at 20.529 kb on + strand, within EX28DRAFT_4356 at 20.574 kb on + strand, within EX28DRAFT_4356 at 20.575 kb on - strand, within EX28DRAFT_4356 at 20.661 kb on + strand, within EX28DRAFT_4356 at 20.661 kb on + strand, within EX28DRAFT_4356 at 20.662 kb on - strand, within EX28DRAFT_4356 at 20.662 kb on - strand, within EX28DRAFT_4356 at 20.662 kb on - strand, within EX28DRAFT_4356 at 20.691 kb on + strand, within EX28DRAFT_4356 at 20.692 kb on - strand, within EX28DRAFT_4356 at 20.700 kb on + strand, within EX28DRAFT_4356 at 20.703 kb on + strand, within EX28DRAFT_4356 at 20.768 kb on - strand, within EX28DRAFT_4356 at 20.853 kb on + strand, within EX28DRAFT_4356 at 20.875 kb on - strand, within EX28DRAFT_4356 at 20.887 kb on + strand, within EX28DRAFT_4356 at 20.887 kb on + strand, within EX28DRAFT_4356 at 20.888 kb on - strand, within EX28DRAFT_4356 at 20.888 kb on - strand, within EX28DRAFT_4356 at 20.932 kb on - strand, within EX28DRAFT_4356 at 20.932 kb on - strand, within EX28DRAFT_4356 at 20.987 kb on - strand, within EX28DRAFT_4356
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 17,850 + -0.2 17,910 - -0.2 17,937 + -0.7 17,938 - -0.4 17,938 - +0.3 17,938 - +0.4 17,998 + EX28DRAFT_4354 0.16 -0.2 18,000 + EX28DRAFT_4354 0.16 +0.2 18,000 + EX28DRAFT_4354 0.16 -0.0 18,093 + EX28DRAFT_4354 0.30 +0.1 18,094 - EX28DRAFT_4354 0.30 -0.8 18,155 - EX28DRAFT_4354 0.39 -0.1 18,171 + EX28DRAFT_4354 0.41 +0.1 18,187 - EX28DRAFT_4354 0.44 +0.1 18,187 - EX28DRAFT_4354 0.44 -0.2 18,200 - EX28DRAFT_4354 0.45 +0.6 18,200 - EX28DRAFT_4354 0.45 +1.2 18,202 - EX28DRAFT_4354 0.46 +0.6 18,250 + EX28DRAFT_4354 0.53 +0.1 18,251 - EX28DRAFT_4354 0.53 +0.7 18,251 - EX28DRAFT_4354 0.53 -0.7 18,254 + EX28DRAFT_4354 0.53 -0.5 18,255 - EX28DRAFT_4354 0.53 -0.1 18,255 - EX28DRAFT_4354 0.53 +0.4 18,356 + EX28DRAFT_4354 0.68 -1.8 18,356 + EX28DRAFT_4354 0.68 +0.0 18,356 + EX28DRAFT_4354 0.68 -0.7 18,366 + EX28DRAFT_4354 0.70 +0.2 18,366 + EX28DRAFT_4354 0.70 -0.5 18,366 + EX28DRAFT_4354 0.70 +0.2 18,366 + EX28DRAFT_4354 0.70 +1.5 18,367 - EX28DRAFT_4354 0.70 +0.9 18,401 - EX28DRAFT_4354 0.75 +0.0 18,403 - EX28DRAFT_4354 0.75 -0.6 18,442 + EX28DRAFT_4354 0.81 -1.3 18,490 - EX28DRAFT_4354 0.88 +0.2 18,510 + +0.3 18,510 + -0.8 18,587 + -2.5 18,587 + +0.3 18,588 - +1.0 18,588 - +1.0 18,644 + +0.5 18,644 + +0.0 18,645 - +0.6 18,652 + +0.1 18,652 + -1.2 18,653 - -0.2 18,653 - +0.3 18,653 - +0.8 18,653 - +0.6 18,672 + -0.0 18,686 - -0.4 18,767 + +0.9 18,836 - EX28DRAFT_4355 0.13 +0.5 18,878 + EX28DRAFT_4355 0.16 +4.0 18,878 + EX28DRAFT_4355 0.16 -0.7 18,878 + EX28DRAFT_4355 0.16 +0.0 18,898 - EX28DRAFT_4355 0.17 -0.2 18,960 - EX28DRAFT_4355 0.22 -0.4 19,039 - EX28DRAFT_4355 0.27 -0.2 19,042 - EX28DRAFT_4355 0.28 +0.6 19,042 - EX28DRAFT_4355 0.28 +0.5 19,274 + EX28DRAFT_4355 0.44 +0.2 19,274 + EX28DRAFT_4355 0.44 +0.1 19,283 + EX28DRAFT_4355 0.44 +1.6 19,284 - EX28DRAFT_4355 0.45 +0.5 19,284 - EX28DRAFT_4355 0.45 +1.0 19,286 + EX28DRAFT_4355 0.45 +0.9 19,286 + EX28DRAFT_4355 0.45 +0.9 19,404 + EX28DRAFT_4355 0.53 -1.0 19,405 - EX28DRAFT_4355 0.53 +1.5 19,405 - EX28DRAFT_4355 0.53 +0.3 19,431 - EX28DRAFT_4355 0.55 -0.2 19,431 - EX28DRAFT_4355 0.55 +0.5 19,451 + EX28DRAFT_4355 0.56 +0.1 19,683 - EX28DRAFT_4355 0.73 +0.1 19,919 + EX28DRAFT_4355 0.89 +0.6 19,919 + EX28DRAFT_4355 0.89 +1.8 19,920 - EX28DRAFT_4355 0.89 -1.7 19,920 - EX28DRAFT_4355 0.89 +0.4 20,039 - +0.3 20,064 + +0.3 20,065 - -0.6 20,065 - +0.8 20,065 - -0.5 20,065 - +0.0 20,065 - +1.0 20,107 - +1.1 20,119 - +0.1 20,126 - -1.1 20,126 - -0.2 20,163 + -0.9 20,163 + -0.4 20,163 + -1.2 20,163 + -0.8 20,163 + -1.0 20,164 - -0.5 20,164 - +0.8 20,164 - -0.3 20,164 - +0.6 20,164 - -0.6 20,164 - -0.2 20,185 - -0.7 20,237 - -0.4 20,237 - -0.4 20,237 - -0.3 20,240 + -1.2 20,241 - -2.5 20,241 - +0.1 20,349 - EX28DRAFT_4356 0.17 +0.2 20,529 + EX28DRAFT_4356 0.30 +0.3 20,574 + EX28DRAFT_4356 0.33 +0.1 20,575 - EX28DRAFT_4356 0.33 +0.1 20,661 + EX28DRAFT_4356 0.39 +0.6 20,661 + EX28DRAFT_4356 0.39 +0.4 20,662 - EX28DRAFT_4356 0.39 +0.3 20,662 - EX28DRAFT_4356 0.39 -2.0 20,662 - EX28DRAFT_4356 0.39 -0.1 20,691 + EX28DRAFT_4356 0.42 +0.1 20,692 - EX28DRAFT_4356 0.42 +0.3 20,700 + EX28DRAFT_4356 0.42 -0.3 20,703 + EX28DRAFT_4356 0.42 +0.9 20,768 - EX28DRAFT_4356 0.47 +0.6 20,853 + EX28DRAFT_4356 0.53 -0.7 20,875 - EX28DRAFT_4356 0.55 +0.4 20,887 + EX28DRAFT_4356 0.56 -0.2 20,887 + EX28DRAFT_4356 0.56 -0.2 20,888 - EX28DRAFT_4356 0.56 -1.8 20,888 - EX28DRAFT_4356 0.56 +0.6 20,932 - EX28DRAFT_4356 0.59 -1.7 20,932 - EX28DRAFT_4356 0.59 +0.8 20,987 - EX28DRAFT_4356 0.63 -0.4
Or see this region's nucleotide sequence