Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4269

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4268 and EX28DRAFT_4269 are separated by 63 nucleotidesEX28DRAFT_4269 and EX28DRAFT_4270 are separated by 108 nucleotidesEX28DRAFT_4270 and EX28DRAFT_4271 are separated by 154 nucleotides EX28DRAFT_4268: EX28DRAFT_4268 - putative efflux protein, MATE family, at 71,947 to 73,284 _4268 EX28DRAFT_4269: EX28DRAFT_4269 - SOS regulatory protein LexA, at 73,348 to 73,956 _4269 EX28DRAFT_4270: EX28DRAFT_4270 - Diacylglycerol kinase, at 74,065 to 74,433 _4270 EX28DRAFT_4271: EX28DRAFT_4271 - glycerol-3-phosphate acyltransferase (EC 2.3.1.15), at 74,588 to 77,008 _4271 Position (kb) 73 74Strain fitness (log2 ratio) -1 0 1 2at 72.389 kb on + strand, within EX28DRAFT_4268at 72.412 kb on + strand, within EX28DRAFT_4268at 72.420 kb on - strand, within EX28DRAFT_4268at 72.675 kb on + strand, within EX28DRAFT_4268at 72.678 kb on + strand, within EX28DRAFT_4268at 72.679 kb on - strand, within EX28DRAFT_4268at 72.679 kb on - strand, within EX28DRAFT_4268at 72.679 kb on - strand, within EX28DRAFT_4268at 72.769 kb on - strand, within EX28DRAFT_4268at 72.816 kb on - strand, within EX28DRAFT_4268at 72.963 kb on + strand, within EX28DRAFT_4268at 73.055 kb on + strand, within EX28DRAFT_4268at 73.055 kb on + strand, within EX28DRAFT_4268at 73.055 kb on + strand, within EX28DRAFT_4268at 73.056 kb on - strand, within EX28DRAFT_4268at 73.155 kb on - strandat 73.511 kb on - strand, within EX28DRAFT_4269at 74.048 kb on + strandat 74.048 kb on + strandat 74.048 kb on + strandat 74.048 kb on + strandat 74.053 kb on - strandat 74.230 kb on + strand, within EX28DRAFT_4270at 74.502 kb on + strandat 74.503 kb on - strandat 74.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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72,389 + EX28DRAFT_4268 0.33 +0.4
72,412 + EX28DRAFT_4268 0.35 +1.8
72,420 - EX28DRAFT_4268 0.35 -1.1
72,675 + EX28DRAFT_4268 0.54 +0.1
72,678 + EX28DRAFT_4268 0.55 +0.2
72,679 - EX28DRAFT_4268 0.55 +0.7
72,679 - EX28DRAFT_4268 0.55 +0.4
72,679 - EX28DRAFT_4268 0.55 -0.1
72,769 - EX28DRAFT_4268 0.61 -0.0
72,816 - EX28DRAFT_4268 0.65 +1.1
72,963 + EX28DRAFT_4268 0.76 +0.7
73,055 + EX28DRAFT_4268 0.83 +0.3
73,055 + EX28DRAFT_4268 0.83 -0.5
73,055 + EX28DRAFT_4268 0.83 +0.4
73,056 - EX28DRAFT_4268 0.83 -0.7
73,155 - +0.2
73,511 - EX28DRAFT_4269 0.27 -1.4
74,048 + -0.6
74,048 + +0.3
74,048 + -0.4
74,048 + +0.8
74,053 - -1.2
74,230 + EX28DRAFT_4270 0.45 +1.9
74,502 + -1.7
74,503 - -0.1
74,562 + -0.4

Or see this region's nucleotide sequence