Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4168 and EX28DRAFT_4169 are separated by 21 nucleotides EX28DRAFT_4169 and EX28DRAFT_4170 are separated by 86 nucleotides
EX28DRAFT_4168: EX28DRAFT_4168 - SIR2-like domain, at 149,144 to 152,260
_4168
EX28DRAFT_4169: EX28DRAFT_4169 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 152,282 to 152,845
_4169
EX28DRAFT_4170: EX28DRAFT_4170 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 152,932 to 154,152
_4170
Position (kb)
152
153 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.282 kb on + strand, within EX28DRAFT_4168 at 151.288 kb on + strand, within EX28DRAFT_4168 at 151.289 kb on - strand, within EX28DRAFT_4168 at 151.303 kb on - strand, within EX28DRAFT_4168 at 151.507 kb on + strand, within EX28DRAFT_4168 at 151.660 kb on + strand, within EX28DRAFT_4168 at 151.660 kb on + strand, within EX28DRAFT_4168 at 151.661 kb on - strand, within EX28DRAFT_4168 at 151.703 kb on - strand, within EX28DRAFT_4168 at 151.703 kb on - strand, within EX28DRAFT_4168 at 151.728 kb on - strand, within EX28DRAFT_4168 at 151.728 kb on - strand, within EX28DRAFT_4168 at 151.754 kb on + strand, within EX28DRAFT_4168 at 151.754 kb on + strand, within EX28DRAFT_4168 at 151.803 kb on + strand, within EX28DRAFT_4168 at 151.804 kb on - strand, within EX28DRAFT_4168 at 151.887 kb on + strand, within EX28DRAFT_4168 at 151.891 kb on + strand, within EX28DRAFT_4168 at 151.891 kb on + strand, within EX28DRAFT_4168 at 151.892 kb on - strand, within EX28DRAFT_4168 at 151.921 kb on + strand, within EX28DRAFT_4168 at 151.934 kb on - strand, within EX28DRAFT_4168 at 151.942 kb on + strand, within EX28DRAFT_4168 at 151.942 kb on + strand, within EX28DRAFT_4168 at 152.007 kb on + strand at 152.010 kb on + strand at 152.042 kb on + strand at 152.043 kb on - strand at 152.044 kb on + strand at 152.064 kb on + strand at 152.064 kb on + strand at 152.065 kb on - strand at 152.065 kb on - strand at 152.076 kb on + strand at 152.076 kb on + strand at 152.098 kb on - strand at 152.218 kb on + strand at 152.219 kb on - strand at 152.227 kb on + strand at 152.240 kb on + strand at 152.254 kb on + strand at 152.254 kb on + strand at 152.255 kb on - strand at 152.278 kb on + strand at 152.278 kb on + strand at 152.300 kb on - strand at 152.300 kb on - strand at 152.300 kb on - strand at 152.303 kb on + strand at 152.303 kb on + strand at 152.304 kb on - strand at 152.304 kb on - strand at 152.304 kb on - strand at 152.304 kb on - strand at 152.444 kb on - strand, within EX28DRAFT_4169 at 152.486 kb on + strand, within EX28DRAFT_4169 at 152.487 kb on - strand, within EX28DRAFT_4169 at 152.847 kb on + strand at 152.879 kb on - strand at 152.892 kb on - strand at 152.913 kb on + strand at 152.992 kb on + strand at 153.061 kb on + strand, within EX28DRAFT_4170 at 153.061 kb on + strand, within EX28DRAFT_4170 at 153.062 kb on - strand, within EX28DRAFT_4170 at 153.293 kb on - strand, within EX28DRAFT_4170 at 153.653 kb on - strand, within EX28DRAFT_4170 at 153.654 kb on + strand, within EX28DRAFT_4170 at 153.654 kb on + strand, within EX28DRAFT_4170 at 153.655 kb on - strand, within EX28DRAFT_4170 at 153.655 kb on - strand, within EX28DRAFT_4170 at 153.661 kb on + strand, within EX28DRAFT_4170 at 153.835 kb on - strand, within EX28DRAFT_4170 at 153.835 kb on - strand, within EX28DRAFT_4170
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 151,282 + EX28DRAFT_4168 0.69 -2.0 151,282 + EX28DRAFT_4168 0.69 +0.6 151,282 + EX28DRAFT_4168 0.69 +0.4 151,282 + EX28DRAFT_4168 0.69 -1.3 151,282 + EX28DRAFT_4168 0.69 -0.1 151,288 + EX28DRAFT_4168 0.69 +0.0 151,289 - EX28DRAFT_4168 0.69 -0.5 151,303 - EX28DRAFT_4168 0.69 -1.4 151,507 + EX28DRAFT_4168 0.76 +0.9 151,660 + EX28DRAFT_4168 0.81 +0.3 151,660 + EX28DRAFT_4168 0.81 -0.9 151,661 - EX28DRAFT_4168 0.81 +1.3 151,703 - EX28DRAFT_4168 0.82 -0.1 151,703 - EX28DRAFT_4168 0.82 -0.4 151,728 - EX28DRAFT_4168 0.83 +0.2 151,728 - EX28DRAFT_4168 0.83 +0.0 151,754 + EX28DRAFT_4168 0.84 +0.2 151,754 + EX28DRAFT_4168 0.84 +0.7 151,803 + EX28DRAFT_4168 0.85 +0.1 151,804 - EX28DRAFT_4168 0.85 +0.3 151,887 + EX28DRAFT_4168 0.88 +0.8 151,891 + EX28DRAFT_4168 0.88 -0.1 151,891 + EX28DRAFT_4168 0.88 +0.5 151,892 - EX28DRAFT_4168 0.88 +1.0 151,921 + EX28DRAFT_4168 0.89 +0.1 151,934 - EX28DRAFT_4168 0.90 -3.9 151,942 + EX28DRAFT_4168 0.90 -1.2 151,942 + EX28DRAFT_4168 0.90 -0.0 152,007 + +0.4 152,010 + +0.0 152,042 + +0.1 152,043 - -0.3 152,044 + -0.8 152,064 + -0.8 152,064 + +0.5 152,065 - +1.3 152,065 - -0.0 152,076 + +0.2 152,076 + +0.8 152,098 - +2.2 152,218 + +0.8 152,219 - -0.7 152,227 + -0.2 152,240 + +0.7 152,254 + +0.6 152,254 + -0.3 152,255 - +0.3 152,278 + +1.3 152,278 + -0.3 152,300 - -0.0 152,300 - -0.2 152,300 - +0.4 152,303 + -1.2 152,303 + -0.2 152,304 - +0.1 152,304 - -0.5 152,304 - +1.5 152,304 - +0.3 152,444 - EX28DRAFT_4169 0.29 -0.7 152,486 + EX28DRAFT_4169 0.36 -0.1 152,487 - EX28DRAFT_4169 0.36 -0.1 152,847 + +0.2 152,879 - -1.4 152,892 - -1.1 152,913 + +0.3 152,992 + -0.3 153,061 + EX28DRAFT_4170 0.11 -0.8 153,061 + EX28DRAFT_4170 0.11 -2.5 153,062 - EX28DRAFT_4170 0.11 -1.1 153,293 - EX28DRAFT_4170 0.30 -4.4 153,653 - EX28DRAFT_4170 0.59 -1.5 153,654 + EX28DRAFT_4170 0.59 -0.8 153,654 + EX28DRAFT_4170 0.59 -5.7 153,655 - EX28DRAFT_4170 0.59 -0.9 153,655 - EX28DRAFT_4170 0.59 -3.4 153,661 + EX28DRAFT_4170 0.60 -0.9 153,835 - EX28DRAFT_4170 0.74 -3.6 153,835 - EX28DRAFT_4170 0.74 -2.0
Or see this region's nucleotide sequence