Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4081

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4080 and EX28DRAFT_4081 are separated by 99 nucleotidesEX28DRAFT_4081 and EX28DRAFT_4082 are separated by 452 nucleotides EX28DRAFT_4080: EX28DRAFT_4080 - Transcriptional regulator, at 54,492 to 55,373 _4080 EX28DRAFT_4081: EX28DRAFT_4081 - Phenolic acid decarboxylase, at 55,473 to 55,979 _4081 EX28DRAFT_4082: EX28DRAFT_4082 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 56,432 to 57,571 _4082 Position (kb) 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 54.581 kb on + strand, within EX28DRAFT_4080at 55.015 kb on + strand, within EX28DRAFT_4080at 55.040 kb on + strand, within EX28DRAFT_4080at 55.086 kb on + strand, within EX28DRAFT_4080at 55.087 kb on - strand, within EX28DRAFT_4080at 55.087 kb on - strand, within EX28DRAFT_4080at 55.264 kb on + strand, within EX28DRAFT_4080at 55.264 kb on + strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.341 kb on + strandat 55.473 kb on - strandat 55.473 kb on - strandat 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.530 kb on - strand, within EX28DRAFT_4081at 55.533 kb on + strand, within EX28DRAFT_4081at 55.534 kb on - strand, within EX28DRAFT_4081at 55.551 kb on + strand, within EX28DRAFT_4081at 55.577 kb on + strand, within EX28DRAFT_4081at 55.577 kb on + strand, within EX28DRAFT_4081at 55.578 kb on - strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.642 kb on - strand, within EX28DRAFT_4081at 55.642 kb on - strand, within EX28DRAFT_4081at 55.643 kb on + strand, within EX28DRAFT_4081at 55.643 kb on + strand, within EX28DRAFT_4081at 55.644 kb on - strand, within EX28DRAFT_4081at 55.644 kb on - strand, within EX28DRAFT_4081at 55.670 kb on + strand, within EX28DRAFT_4081at 55.826 kb on + strand, within EX28DRAFT_4081at 55.827 kb on - strand, within EX28DRAFT_4081at 55.827 kb on - strand, within EX28DRAFT_4081at 55.967 kb on + strandat 56.098 kb on - strandat 56.123 kb on - strandat 56.171 kb on - strandat 56.216 kb on + strandat 56.216 kb on + strandat 56.306 kb on + strandat 56.324 kb on - strandat 56.347 kb on + strandat 56.413 kb on + strandat 56.662 kb on + strand, within EX28DRAFT_4082at 56.695 kb on + strand, within EX28DRAFT_4082at 56.695 kb on + strand, within EX28DRAFT_4082at 56.695 kb on + strand, within EX28DRAFT_4082at 56.747 kb on - strand, within EX28DRAFT_4082at 56.820 kb on - strand, within EX28DRAFT_4082at 56.876 kb on - strand, within EX28DRAFT_4082at 56.919 kb on - strand, within EX28DRAFT_4082at 56.919 kb on - strand, within EX28DRAFT_4082at 56.934 kb on + strand, within EX28DRAFT_4082at 56.934 kb on + strand, within EX28DRAFT_4082

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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54,581 + EX28DRAFT_4080 0.10 +0.3
55,015 + EX28DRAFT_4080 0.59 +0.6
55,040 + EX28DRAFT_4080 0.62 -1.5
55,086 + EX28DRAFT_4080 0.67 -0.8
55,087 - EX28DRAFT_4080 0.67 -0.2
55,087 - EX28DRAFT_4080 0.67 -0.5
55,264 + EX28DRAFT_4080 0.88 -0.4
55,264 + EX28DRAFT_4080 0.88 +0.7
55,265 - EX28DRAFT_4080 0.88 +0.8
55,265 - EX28DRAFT_4080 0.88 +0.6
55,265 - EX28DRAFT_4080 0.88 +0.3
55,265 - EX28DRAFT_4080 0.88 -0.4
55,341 + +0.6
55,473 - -2.3
55,473 - +0.4
55,525 + EX28DRAFT_4081 0.10 +1.0
55,525 + EX28DRAFT_4081 0.10 +0.2
55,525 + EX28DRAFT_4081 0.10 +1.5
55,525 + EX28DRAFT_4081 0.10 -0.1
55,525 + EX28DRAFT_4081 0.10 +0.0
55,525 + EX28DRAFT_4081 0.10 -1.0
55,525 + EX28DRAFT_4081 0.10 +0.5
55,526 - EX28DRAFT_4081 0.10 -0.0
55,526 - EX28DRAFT_4081 0.10 -1.3
55,526 - EX28DRAFT_4081 0.10 -1.3
55,526 - EX28DRAFT_4081 0.10 -0.8
55,526 - EX28DRAFT_4081 0.10 +0.5
55,527 + EX28DRAFT_4081 0.11 -0.1
55,527 + EX28DRAFT_4081 0.11 -0.4
55,527 + EX28DRAFT_4081 0.11 +0.3
55,528 - EX28DRAFT_4081 0.11 -0.0
55,528 - EX28DRAFT_4081 0.11 +1.0
55,528 - EX28DRAFT_4081 0.11 +1.0
55,528 - EX28DRAFT_4081 0.11 +0.3
55,529 + EX28DRAFT_4081 0.11 +1.1
55,529 + EX28DRAFT_4081 0.11 -0.0
55,529 + EX28DRAFT_4081 0.11 +0.4
55,529 + EX28DRAFT_4081 0.11 +0.7
55,530 - EX28DRAFT_4081 0.11 -0.7
55,533 + EX28DRAFT_4081 0.12 +0.2
55,534 - EX28DRAFT_4081 0.12 -0.9
55,551 + EX28DRAFT_4081 0.15 +0.1
55,577 + EX28DRAFT_4081 0.21 +0.9
55,577 + EX28DRAFT_4081 0.21 +0.6
55,578 - EX28DRAFT_4081 0.21 +0.0
55,641 + EX28DRAFT_4081 0.33 +0.8
55,641 + EX28DRAFT_4081 0.33 +0.6
55,641 + EX28DRAFT_4081 0.33 +0.3
55,642 - EX28DRAFT_4081 0.33 +0.8
55,642 - EX28DRAFT_4081 0.33 -0.7
55,643 + EX28DRAFT_4081 0.34 -0.1
55,643 + EX28DRAFT_4081 0.34 -0.5
55,644 - EX28DRAFT_4081 0.34 +0.5
55,644 - EX28DRAFT_4081 0.34 +1.2
55,670 + EX28DRAFT_4081 0.39 -0.1
55,826 + EX28DRAFT_4081 0.70 -0.6
55,827 - EX28DRAFT_4081 0.70 -2.5
55,827 - EX28DRAFT_4081 0.70 +0.2
55,967 + -0.1
56,098 - +0.3
56,123 - +2.4
56,171 - +1.1
56,216 + +0.6
56,216 + +0.1
56,306 + +0.7
56,324 - -4.3
56,347 + +0.3
56,413 + -0.7
56,662 + EX28DRAFT_4082 0.20 +1.9
56,695 + EX28DRAFT_4082 0.23 +1.3
56,695 + EX28DRAFT_4082 0.23 -0.2
56,695 + EX28DRAFT_4082 0.23 +0.8
56,747 - EX28DRAFT_4082 0.28 +0.0
56,820 - EX28DRAFT_4082 0.34 -0.1
56,876 - EX28DRAFT_4082 0.39 -1.9
56,919 - EX28DRAFT_4082 0.43 -0.5
56,919 - EX28DRAFT_4082 0.43 -0.4
56,934 + EX28DRAFT_4082 0.44 +0.4
56,934 + EX28DRAFT_4082 0.44 -1.0

Or see this region's nucleotide sequence