Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3860 and EX28DRAFT_3861 are separated by 32 nucleotides EX28DRAFT_3861 and EX28DRAFT_3862 are separated by 11 nucleotides EX28DRAFT_3862 and EX28DRAFT_3863 are separated by 220 nucleotides EX28DRAFT_3863 and EX28DRAFT_3864 are separated by 9 nucleotides
EX28DRAFT_3860: EX28DRAFT_3860 - protein-export chaperone SecB, at 70,147 to 70,614
_3860
EX28DRAFT_3861: EX28DRAFT_3861 - Glutaredoxin, GrxC family, at 70,647 to 70,898
_3861
EX28DRAFT_3862: EX28DRAFT_3862 - Rhodanese-related sulfurtransferase, at 70,910 to 71,341
_3862
EX28DRAFT_3863: EX28DRAFT_3863 - phosphoglycerate mutase (EC 5.4.2.1), at 71,562 to 73,133
_3863
EX28DRAFT_3864: EX28DRAFT_3864 - Membrane-bound metallopeptidase, at 73,143 to 74,426
_3864
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -2
-1
0
1 at 70.630 kb on - strand at 70.690 kb on + strand, within EX28DRAFT_3861 at 70.691 kb on - strand, within EX28DRAFT_3861 at 70.691 kb on - strand, within EX28DRAFT_3861 at 70.911 kb on + strand at 70.912 kb on - strand at 70.912 kb on - strand at 71.252 kb on - strand, within EX28DRAFT_3862 at 71.370 kb on - strand at 71.390 kb on + strand at 71.391 kb on - strand at 71.392 kb on + strand at 71.393 kb on - strand at 71.393 kb on - strand at 71.393 kb on - strand at 71.413 kb on - strand at 71.433 kb on - strand at 71.433 kb on - strand at 71.614 kb on + strand at 71.652 kb on - strand at 71.813 kb on + strand, within EX28DRAFT_3863 at 71.927 kb on - strand, within EX28DRAFT_3863 at 72.027 kb on + strand, within EX28DRAFT_3863 at 72.027 kb on + strand, within EX28DRAFT_3863 at 72.151 kb on - strand, within EX28DRAFT_3863 at 72.153 kb on + strand, within EX28DRAFT_3863 at 72.153 kb on + strand, within EX28DRAFT_3863 at 72.199 kb on - strand, within EX28DRAFT_3863 at 72.199 kb on - strand, within EX28DRAFT_3863 at 72.267 kb on + strand, within EX28DRAFT_3863 at 72.268 kb on - strand, within EX28DRAFT_3863 at 72.268 kb on - strand, within EX28DRAFT_3863 at 72.578 kb on + strand, within EX28DRAFT_3863 at 72.691 kb on - strand, within EX28DRAFT_3863 at 72.759 kb on - strand, within EX28DRAFT_3863 at 72.779 kb on + strand, within EX28DRAFT_3863 at 72.780 kb on - strand, within EX28DRAFT_3863 at 72.842 kb on - strand, within EX28DRAFT_3863 at 72.842 kb on - strand, within EX28DRAFT_3863 at 72.842 kb on - strand, within EX28DRAFT_3863 at 73.002 kb on + strand at 73.002 kb on + strand at 73.003 kb on - strand at 73.014 kb on - strand at 73.082 kb on + strand at 73.109 kb on + strand at 73.241 kb on - strand at 73.371 kb on - strand, within EX28DRAFT_3864 at 73.446 kb on - strand, within EX28DRAFT_3864 at 73.617 kb on + strand, within EX28DRAFT_3864 at 73.626 kb on + strand, within EX28DRAFT_3864 at 73.653 kb on - strand, within EX28DRAFT_3864 at 74.119 kb on + strand, within EX28DRAFT_3864 at 74.120 kb on - strand, within EX28DRAFT_3864 at 74.120 kb on - strand, within EX28DRAFT_3864
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 70,630 - +0.2 70,690 + EX28DRAFT_3861 0.17 -1.9 70,691 - EX28DRAFT_3861 0.17 +0.3 70,691 - EX28DRAFT_3861 0.17 -1.0 70,911 + -2.2 70,912 - -0.0 70,912 - +0.3 71,252 - EX28DRAFT_3862 0.79 -1.1 71,370 - -0.5 71,390 + -1.6 71,391 - -0.7 71,392 + +0.4 71,393 - +0.5 71,393 - +0.1 71,393 - -0.5 71,413 - +0.5 71,433 - +0.2 71,433 - +0.3 71,614 + -0.4 71,652 - -0.4 71,813 + EX28DRAFT_3863 0.16 -1.2 71,927 - EX28DRAFT_3863 0.23 -0.5 72,027 + EX28DRAFT_3863 0.30 +0.1 72,027 + EX28DRAFT_3863 0.30 +1.1 72,151 - EX28DRAFT_3863 0.37 +0.8 72,153 + EX28DRAFT_3863 0.38 -0.2 72,153 + EX28DRAFT_3863 0.38 -0.3 72,199 - EX28DRAFT_3863 0.41 +0.7 72,199 - EX28DRAFT_3863 0.41 -2.6 72,267 + EX28DRAFT_3863 0.45 +0.5 72,268 - EX28DRAFT_3863 0.45 -0.6 72,268 - EX28DRAFT_3863 0.45 +1.1 72,578 + EX28DRAFT_3863 0.65 -2.5 72,691 - EX28DRAFT_3863 0.72 +1.3 72,759 - EX28DRAFT_3863 0.76 +0.4 72,779 + EX28DRAFT_3863 0.77 +0.7 72,780 - EX28DRAFT_3863 0.77 -1.4 72,842 - EX28DRAFT_3863 0.81 +0.4 72,842 - EX28DRAFT_3863 0.81 -1.1 72,842 - EX28DRAFT_3863 0.81 +0.2 73,002 + +0.2 73,002 + +1.0 73,003 - -0.5 73,014 - +0.4 73,082 + +1.1 73,109 + -0.2 73,241 - -1.6 73,371 - EX28DRAFT_3864 0.18 +1.3 73,446 - EX28DRAFT_3864 0.24 -1.6 73,617 + EX28DRAFT_3864 0.37 -1.8 73,626 + EX28DRAFT_3864 0.38 -0.9 73,653 - EX28DRAFT_3864 0.40 +0.1 74,119 + EX28DRAFT_3864 0.76 +0.5 74,120 - EX28DRAFT_3864 0.76 -0.6 74,120 - EX28DRAFT_3864 0.76 +0.1
Or see this region's nucleotide sequence