Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3224

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3221 and EX28DRAFT_3222 are separated by 17 nucleotidesEX28DRAFT_3222 and EX28DRAFT_3223 are separated by 89 nucleotidesEX28DRAFT_3223 and EX28DRAFT_3224 are separated by 287 nucleotidesEX28DRAFT_3224 and EX28DRAFT_3225 are separated by 191 nucleotidesEX28DRAFT_3225 and EX28DRAFT_3226 are separated by 9 nucleotidesEX28DRAFT_3226 and EX28DRAFT_3227 are separated by 223 nucleotides EX28DRAFT_3221: EX28DRAFT_3221 - Uncharacterized protein conserved in bacteria, at 521,432 to 521,884 _3221 EX28DRAFT_3222: EX28DRAFT_3222 - RNA, at 521,902 to 522,002 _3222 EX28DRAFT_3223: EX28DRAFT_3223 - tRNA, at 522,092 to 522,168 _3223 EX28DRAFT_3224: EX28DRAFT_3224 - argininosuccinate synthase (EC 6.3.4.5), at 522,456 to 523,802 _3224 EX28DRAFT_3225: EX28DRAFT_3225 - tRNA, at 523,994 to 524,080 _3225 EX28DRAFT_3226: EX28DRAFT_3226 - protein translocase, SecG subunit, at 524,090 to 524,422 _3226 EX28DRAFT_3227: EX28DRAFT_3227 - phosphoglucosamine mutase (EC 5.4.2.10), at 524,646 to 525,983 _3227 Position (kb) 522 523 524Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 522.214 kb on + strandat 522.214 kb on + strandat 522.259 kb on + strandat 522.263 kb on - strandat 522.265 kb on - strandat 522.270 kb on + strandat 522.312 kb on - strandat 522.455 kb on + strandat 522.494 kb on + strandat 522.495 kb on - strandat 522.576 kb on + strandat 522.613 kb on - strand, within EX28DRAFT_3224at 522.613 kb on - strand, within EX28DRAFT_3224at 522.643 kb on - strand, within EX28DRAFT_3224at 522.643 kb on - strand, within EX28DRAFT_3224at 522.751 kb on - strand, within EX28DRAFT_3224at 522.852 kb on - strand, within EX28DRAFT_3224at 522.916 kb on - strand, within EX28DRAFT_3224at 523.005 kb on - strand, within EX28DRAFT_3224at 523.027 kb on - strand, within EX28DRAFT_3224at 523.400 kb on + strand, within EX28DRAFT_3224at 523.401 kb on - strand, within EX28DRAFT_3224at 523.401 kb on - strand, within EX28DRAFT_3224at 523.534 kb on + strand, within EX28DRAFT_3224at 523.563 kb on + strand, within EX28DRAFT_3224at 523.600 kb on - strand, within EX28DRAFT_3224at 523.679 kb on + strandat 523.679 kb on + strandat 523.719 kb on + strandat 523.719 kb on + strandat 523.719 kb on + strandat 523.720 kb on - strandat 523.721 kb on + strandat 523.801 kb on - strandat 523.810 kb on + strandat 523.810 kb on + strandat 523.813 kb on - strandat 523.813 kb on - strandat 523.813 kb on - strandat 523.846 kb on + strandat 523.948 kb on - strandat 523.948 kb on - strandat 524.423 kb on - strandat 524.557 kb on - strandat 524.634 kb on + strandat 524.635 kb on - strandat 524.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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522,214 + -0.3
522,214 + -0.9
522,259 + +0.5
522,263 - +1.5
522,265 - -0.6
522,270 + +0.5
522,312 - -0.3
522,455 + -5.1
522,494 + -6.2
522,495 - -6.6
522,576 + -5.8
522,613 - EX28DRAFT_3224 0.12 -4.6
522,613 - EX28DRAFT_3224 0.12 -2.7
522,643 - EX28DRAFT_3224 0.14 -5.2
522,643 - EX28DRAFT_3224 0.14 -3.3
522,751 - EX28DRAFT_3224 0.22 -5.5
522,852 - EX28DRAFT_3224 0.29 -4.1
522,916 - EX28DRAFT_3224 0.34 -4.8
523,005 - EX28DRAFT_3224 0.41 -3.2
523,027 - EX28DRAFT_3224 0.42 -2.7
523,400 + EX28DRAFT_3224 0.70 -3.5
523,401 - EX28DRAFT_3224 0.70 -5.9
523,401 - EX28DRAFT_3224 0.70 -4.5
523,534 + EX28DRAFT_3224 0.80 -2.5
523,563 + EX28DRAFT_3224 0.82 -3.0
523,600 - EX28DRAFT_3224 0.85 -3.3
523,679 + -3.1
523,679 + -4.0
523,719 + -3.2
523,719 + -5.7
523,719 + -3.7
523,720 - -5.3
523,721 + -1.9
523,801 - -0.5
523,810 + -0.5
523,810 + +0.5
523,813 - -0.1
523,813 - -0.7
523,813 - -0.6
523,846 + -0.8
523,948 - -0.0
523,948 - -0.5
524,423 - -0.5
524,557 - +0.3
524,634 + -1.2
524,635 - +0.0
524,647 + -0.3

Or see this region's nucleotide sequence