Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2915 and EX28DRAFT_2916 overlap by 31 nucleotides EX28DRAFT_2916 and EX28DRAFT_2917 are separated by 121 nucleotides
EX28DRAFT_2915: EX28DRAFT_2915 - Transcriptional regulators, at 225,394 to 226,431
_2915
EX28DRAFT_2916: EX28DRAFT_2916 - diaminopimelate decarboxylase, at 226,401 to 227,663
_2916
EX28DRAFT_2917: EX28DRAFT_2917 - Transcriptional regulator, at 227,785 to 228,711
_2917
Position (kb) 226
227
228 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 225.486 kb on + strand at 225.610 kb on + strand, within EX28DRAFT_2915 at 225.611 kb on - strand, within EX28DRAFT_2915 at 225.758 kb on - strand, within EX28DRAFT_2915 at 225.767 kb on - strand, within EX28DRAFT_2915 at 225.904 kb on + strand, within EX28DRAFT_2915 at 225.905 kb on - strand, within EX28DRAFT_2915 at 225.940 kb on - strand, within EX28DRAFT_2915 at 225.993 kb on + strand, within EX28DRAFT_2915 at 226.069 kb on + strand, within EX28DRAFT_2915 at 226.076 kb on + strand, within EX28DRAFT_2915 at 226.076 kb on + strand, within EX28DRAFT_2915 at 226.077 kb on - strand, within EX28DRAFT_2915 at 226.195 kb on - strand, within EX28DRAFT_2915 at 226.261 kb on + strand, within EX28DRAFT_2915 at 226.278 kb on + strand, within EX28DRAFT_2915 at 226.279 kb on - strand, within EX28DRAFT_2915 at 226.279 kb on - strand, within EX28DRAFT_2915 at 226.279 kb on - strand, within EX28DRAFT_2915 at 226.394 kb on - strand at 226.508 kb on - strand at 226.508 kb on - strand at 226.512 kb on - strand at 226.558 kb on + strand, within EX28DRAFT_2916 at 226.713 kb on - strand, within EX28DRAFT_2916 at 226.723 kb on + strand, within EX28DRAFT_2916 at 226.732 kb on + strand, within EX28DRAFT_2916 at 227.072 kb on - strand, within EX28DRAFT_2916 at 227.096 kb on + strand, within EX28DRAFT_2916 at 227.131 kb on - strand, within EX28DRAFT_2916 at 227.153 kb on + strand, within EX28DRAFT_2916 at 227.154 kb on - strand, within EX28DRAFT_2916 at 227.154 kb on - strand, within EX28DRAFT_2916 at 227.288 kb on + strand, within EX28DRAFT_2916 at 227.289 kb on - strand, within EX28DRAFT_2916 at 227.292 kb on + strand, within EX28DRAFT_2916 at 227.293 kb on - strand, within EX28DRAFT_2916 at 227.484 kb on - strand, within EX28DRAFT_2916 at 227.678 kb on - strand at 227.764 kb on + strand at 227.871 kb on + strand at 227.871 kb on + strand at 227.871 kb on + strand at 228.365 kb on - strand, within EX28DRAFT_2917 at 228.391 kb on + strand, within EX28DRAFT_2917 at 228.412 kb on + strand, within EX28DRAFT_2917 at 228.413 kb on + strand, within EX28DRAFT_2917 at 228.568 kb on - strand, within EX28DRAFT_2917
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 225,486 + -1.1 225,610 + EX28DRAFT_2915 0.21 +0.0 225,611 - EX28DRAFT_2915 0.21 -2.7 225,758 - EX28DRAFT_2915 0.35 +0.8 225,767 - EX28DRAFT_2915 0.36 -2.3 225,904 + EX28DRAFT_2915 0.49 -0.1 225,905 - EX28DRAFT_2915 0.49 -0.2 225,940 - EX28DRAFT_2915 0.53 -0.6 225,993 + EX28DRAFT_2915 0.58 -1.3 226,069 + EX28DRAFT_2915 0.65 +0.9 226,076 + EX28DRAFT_2915 0.66 +0.4 226,076 + EX28DRAFT_2915 0.66 +0.5 226,077 - EX28DRAFT_2915 0.66 -2.9 226,195 - EX28DRAFT_2915 0.77 -0.5 226,261 + EX28DRAFT_2915 0.84 -1.0 226,278 + EX28DRAFT_2915 0.85 +0.2 226,279 - EX28DRAFT_2915 0.85 +0.2 226,279 - EX28DRAFT_2915 0.85 +0.2 226,279 - EX28DRAFT_2915 0.85 +0.4 226,394 - +0.2 226,508 - -2.3 226,508 - -1.9 226,512 - -1.5 226,558 + EX28DRAFT_2916 0.12 -4.6 226,713 - EX28DRAFT_2916 0.25 -4.5 226,723 + EX28DRAFT_2916 0.25 -3.8 226,732 + EX28DRAFT_2916 0.26 +0.1 227,072 - EX28DRAFT_2916 0.53 -2.7 227,096 + EX28DRAFT_2916 0.55 -6.0 227,131 - EX28DRAFT_2916 0.58 -7.7 227,153 + EX28DRAFT_2916 0.60 -4.2 227,154 - EX28DRAFT_2916 0.60 -5.3 227,154 - EX28DRAFT_2916 0.60 -4.0 227,288 + EX28DRAFT_2916 0.70 -4.1 227,289 - EX28DRAFT_2916 0.70 -7.3 227,292 + EX28DRAFT_2916 0.71 -0.9 227,293 - EX28DRAFT_2916 0.71 -2.7 227,484 - EX28DRAFT_2916 0.86 -5.1 227,678 - -2.3 227,764 + +0.1 227,871 + -4.0 227,871 + -5.1 227,871 + -3.9 228,365 - EX28DRAFT_2917 0.63 -3.1 228,391 + EX28DRAFT_2917 0.65 -4.3 228,412 + EX28DRAFT_2917 0.68 -1.4 228,413 + EX28DRAFT_2917 0.68 -2.5 228,568 - EX28DRAFT_2917 0.84 -3.5
Or see this region's nucleotide sequence