Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2893

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2892 and EX28DRAFT_2893 are separated by 212 nucleotidesEX28DRAFT_2893 and EX28DRAFT_2894 are separated by 34 nucleotides EX28DRAFT_2892: EX28DRAFT_2892 - N-acetylmuramoyl-L-alanine amidase, at 195,589 to 196,857 _2892 EX28DRAFT_2893: EX28DRAFT_2893 - N-acetylglutamate synthase (EC 2.3.1.1), at 197,070 to 198,401 _2893 EX28DRAFT_2894: EX28DRAFT_2894 - DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5), at 198,436 to 200,256 _2894 Position (kb) 197 198 199Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 196.119 kb on + strand, within EX28DRAFT_2892at 196.137 kb on + strand, within EX28DRAFT_2892at 196.137 kb on + strand, within EX28DRAFT_2892at 196.140 kb on - strand, within EX28DRAFT_2892at 196.140 kb on - strand, within EX28DRAFT_2892at 196.149 kb on + strand, within EX28DRAFT_2892at 196.361 kb on + strand, within EX28DRAFT_2892at 196.395 kb on + strand, within EX28DRAFT_2892at 196.440 kb on + strand, within EX28DRAFT_2892at 196.441 kb on - strand, within EX28DRAFT_2892at 196.664 kb on + strand, within EX28DRAFT_2892at 196.665 kb on - strand, within EX28DRAFT_2892at 196.704 kb on - strand, within EX28DRAFT_2892at 196.704 kb on - strand, within EX28DRAFT_2892at 196.801 kb on + strandat 196.874 kb on - strandat 196.928 kb on + strandat 196.929 kb on - strandat 196.929 kb on - strandat 196.949 kb on - strandat 197.084 kb on + strandat 197.085 kb on - strandat 197.085 kb on - strandat 197.085 kb on - strandat 197.125 kb on - strandat 197.256 kb on + strand, within EX28DRAFT_2893at 197.256 kb on + strand, within EX28DRAFT_2893at 197.257 kb on - strand, within EX28DRAFT_2893at 197.257 kb on - strand, within EX28DRAFT_2893at 197.423 kb on + strand, within EX28DRAFT_2893at 197.423 kb on + strand, within EX28DRAFT_2893at 197.549 kb on + strand, within EX28DRAFT_2893at 197.549 kb on + strand, within EX28DRAFT_2893at 197.550 kb on - strand, within EX28DRAFT_2893at 197.877 kb on + strand, within EX28DRAFT_2893at 198.189 kb on - strand, within EX28DRAFT_2893at 198.354 kb on + strandat 198.354 kb on + strandat 198.354 kb on + strandat 198.355 kb on - strandat 198.355 kb on - strandat 198.355 kb on - strandat 198.360 kb on + strandat 198.360 kb on + strandat 198.361 kb on - strandat 198.361 kb on - strandat 198.361 kb on - strandat 198.560 kb on + strandat 198.560 kb on + strandat 198.560 kb on + strandat 198.561 kb on - strandat 198.580 kb on + strandat 198.580 kb on + strandat 198.580 kb on + strandat 198.580 kb on + strandat 198.642 kb on + strand, within EX28DRAFT_2894at 198.643 kb on - strand, within EX28DRAFT_2894at 198.948 kb on - strand, within EX28DRAFT_2894at 198.982 kb on - strand, within EX28DRAFT_2894at 198.995 kb on - strand, within EX28DRAFT_2894at 198.995 kb on - strand, within EX28DRAFT_2894at 199.049 kb on + strand, within EX28DRAFT_2894at 199.084 kb on - strand, within EX28DRAFT_2894at 199.313 kb on + strand, within EX28DRAFT_2894

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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196,119 + EX28DRAFT_2892 0.42 -0.2
196,137 + EX28DRAFT_2892 0.43 +0.3
196,137 + EX28DRAFT_2892 0.43 -0.1
196,140 - EX28DRAFT_2892 0.43 -0.6
196,140 - EX28DRAFT_2892 0.43 +0.0
196,149 + EX28DRAFT_2892 0.44 +0.2
196,361 + EX28DRAFT_2892 0.61 +0.1
196,395 + EX28DRAFT_2892 0.64 -3.1
196,440 + EX28DRAFT_2892 0.67 -0.1
196,441 - EX28DRAFT_2892 0.67 +0.5
196,664 + EX28DRAFT_2892 0.85 -0.0
196,665 - EX28DRAFT_2892 0.85 +0.1
196,704 - EX28DRAFT_2892 0.88 -0.0
196,704 - EX28DRAFT_2892 0.88 +0.3
196,801 + +0.8
196,874 - +0.9
196,928 + +1.1
196,929 - -0.1
196,929 - +0.5
196,949 - -0.1
197,084 + -1.8
197,085 - -1.9
197,085 - -3.9
197,085 - -1.5
197,125 - -4.3
197,256 + EX28DRAFT_2893 0.14 -1.9
197,256 + EX28DRAFT_2893 0.14 -1.9
197,257 - EX28DRAFT_2893 0.14 -4.1
197,257 - EX28DRAFT_2893 0.14 -3.1
197,423 + EX28DRAFT_2893 0.27 -2.8
197,423 + EX28DRAFT_2893 0.27 -3.9
197,549 + EX28DRAFT_2893 0.36 -4.0
197,549 + EX28DRAFT_2893 0.36 -4.8
197,550 - EX28DRAFT_2893 0.36 -6.4
197,877 + EX28DRAFT_2893 0.61 -2.0
198,189 - EX28DRAFT_2893 0.84 -1.0
198,354 + -4.4
198,354 + -3.7
198,354 + -2.2
198,355 - -4.2
198,355 - -1.8
198,355 - -2.5
198,360 + -3.0
198,360 + -4.3
198,361 - -3.9
198,361 - -0.2
198,361 - -4.2
198,560 + +2.6
198,560 + +0.2
198,560 + -2.1
198,561 - +0.4
198,580 + +0.9
198,580 + -0.2
198,580 + +0.2
198,580 + +0.0
198,642 + EX28DRAFT_2894 0.11 -1.3
198,643 - EX28DRAFT_2894 0.11 +0.1
198,948 - EX28DRAFT_2894 0.28 +0.8
198,982 - EX28DRAFT_2894 0.30 -2.3
198,995 - EX28DRAFT_2894 0.31 +0.8
198,995 - EX28DRAFT_2894 0.31 +0.6
199,049 + EX28DRAFT_2894 0.34 +0.6
199,084 - EX28DRAFT_2894 0.36 +0.0
199,313 + EX28DRAFT_2894 0.48 +0.7

Or see this region's nucleotide sequence