Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2818

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2816 and EX28DRAFT_2817 are separated by 211 nucleotidesEX28DRAFT_2817 and EX28DRAFT_2818 are separated by 3 nucleotidesEX28DRAFT_2818 and EX28DRAFT_2819 overlap by 10 nucleotidesEX28DRAFT_2819 and EX28DRAFT_2820 are separated by 2 nucleotides EX28DRAFT_2816: EX28DRAFT_2816 - Transcriptional repressor of hyc and hyp operons, at 120,136 to 120,600 _2816 EX28DRAFT_2817: EX28DRAFT_2817 - hydrogenase nickel insertion protein HypA, at 120,812 to 121,162 _2817 EX28DRAFT_2818: EX28DRAFT_2818 - hydrogenase accessory protein HypB, at 121,166 to 122,029 _2818 EX28DRAFT_2819: EX28DRAFT_2819 - hydrogenase assembly chaperone HypC/HupF, at 122,020 to 122,292 _2819 EX28DRAFT_2820: EX28DRAFT_2820 - hydrogenase expression/formation protein HypD, at 122,295 to 123,416 _2820 Position (kb) 121 122 123Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 120.212 kb on + strand, within EX28DRAFT_2816at 120.224 kb on + strand, within EX28DRAFT_2816at 120.225 kb on - strand, within EX28DRAFT_2816at 120.249 kb on - strand, within EX28DRAFT_2816at 120.330 kb on + strand, within EX28DRAFT_2816at 120.330 kb on + strand, within EX28DRAFT_2816at 120.497 kb on - strand, within EX28DRAFT_2816at 120.567 kb on - strandat 120.595 kb on - strandat 120.600 kb on + strandat 120.601 kb on - strandat 120.601 kb on - strandat 121.046 kb on + strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.047 kb on - strand, within EX28DRAFT_2817at 121.165 kb on + strandat 121.166 kb on - strandat 121.166 kb on - strandat 121.166 kb on - strandat 121.166 kb on - strandat 121.171 kb on + strandat 121.172 kb on - strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.202 kb on + strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.203 kb on - strandat 121.204 kb on + strandat 121.204 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.206 kb on + strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.207 kb on - strandat 121.837 kb on + strand, within EX28DRAFT_2818at 121.837 kb on + strand, within EX28DRAFT_2818at 121.838 kb on - strand, within EX28DRAFT_2818at 121.889 kb on + strand, within EX28DRAFT_2818at 121.905 kb on + strand, within EX28DRAFT_2818at 121.906 kb on - strand, within EX28DRAFT_2818at 121.909 kb on + strand, within EX28DRAFT_2818at 121.909 kb on + strand, within EX28DRAFT_2818at 121.909 kb on + strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.910 kb on - strand, within EX28DRAFT_2818at 121.922 kb on + strand, within EX28DRAFT_2818at 121.922 kb on + strand, within EX28DRAFT_2818at 121.923 kb on - strand, within EX28DRAFT_2818at 122.028 kb on - strandat 122.028 kb on - strandat 122.047 kb on + strandat 122.048 kb on - strand, within EX28DRAFT_2819at 122.048 kb on - strand, within EX28DRAFT_2819at 122.193 kb on - strand, within EX28DRAFT_2819at 122.301 kb on + strandat 122.380 kb on - strandat 122.380 kb on - strandat 122.661 kb on + strand, within EX28DRAFT_2820at 122.661 kb on + strand, within EX28DRAFT_2820at 122.662 kb on - strand, within EX28DRAFT_2820at 122.662 kb on - strand, within EX28DRAFT_2820at 122.754 kb on - strand, within EX28DRAFT_2820at 122.823 kb on - strand, within EX28DRAFT_2820at 122.823 kb on - strand, within EX28DRAFT_2820at 122.946 kb on + strand, within EX28DRAFT_2820at 122.947 kb on - strand, within EX28DRAFT_2820at 122.989 kb on + strand, within EX28DRAFT_2820at 122.989 kb on + strand, within EX28DRAFT_2820at 122.989 kb on + strand, within EX28DRAFT_2820

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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120,212 + EX28DRAFT_2816 0.16 -0.2
120,224 + EX28DRAFT_2816 0.19 +0.3
120,225 - EX28DRAFT_2816 0.19 +0.9
120,249 - EX28DRAFT_2816 0.24 -0.2
120,330 + EX28DRAFT_2816 0.42 +0.1
120,330 + EX28DRAFT_2816 0.42 -0.6
120,497 - EX28DRAFT_2816 0.78 -0.3
120,567 - +1.2
120,595 - +2.4
120,600 + -0.7
120,601 - +1.5
120,601 - +0.2
121,046 + EX28DRAFT_2817 0.67 +0.4
121,047 - EX28DRAFT_2817 0.67 -0.1
121,047 - EX28DRAFT_2817 0.67 -0.3
121,047 - EX28DRAFT_2817 0.67 -0.3
121,047 - EX28DRAFT_2817 0.67 -0.4
121,047 - EX28DRAFT_2817 0.67 +1.6
121,047 - EX28DRAFT_2817 0.67 -0.3
121,165 + -0.7
121,166 - -0.1
121,166 - -0.1
121,166 - -3.2
121,166 - +1.9
121,171 + +0.3
121,172 - +0.5
121,202 + +0.8
121,202 + -0.1
121,202 + +0.8
121,202 + -1.1
121,202 + -2.3
121,203 - -1.0
121,203 - -0.5
121,203 - +0.3
121,203 - +0.5
121,203 - -1.6
121,203 - -0.6
121,203 - -0.5
121,203 - +0.4
121,204 + -5.0
121,204 + -0.1
121,206 + +0.1
121,206 + -0.1
121,206 + +0.6
121,206 + -1.8
121,206 + +0.9
121,206 + -0.6
121,206 + -0.0
121,206 + +0.6
121,206 + -0.4
121,207 - +1.0
121,207 - +0.7
121,207 - -1.0
121,207 - +0.0
121,207 - -0.1
121,837 + EX28DRAFT_2818 0.78 -0.8
121,837 + EX28DRAFT_2818 0.78 -0.2
121,838 - EX28DRAFT_2818 0.78 +0.1
121,889 + EX28DRAFT_2818 0.84 -1.2
121,905 + EX28DRAFT_2818 0.86 -1.8
121,906 - EX28DRAFT_2818 0.86 -0.2
121,909 + EX28DRAFT_2818 0.86 -1.2
121,909 + EX28DRAFT_2818 0.86 +0.1
121,909 + EX28DRAFT_2818 0.86 -0.1
121,910 - EX28DRAFT_2818 0.86 -0.9
121,910 - EX28DRAFT_2818 0.86 +0.1
121,910 - EX28DRAFT_2818 0.86 -0.1
121,910 - EX28DRAFT_2818 0.86 +0.0
121,922 + EX28DRAFT_2818 0.88 +0.2
121,922 + EX28DRAFT_2818 0.88 -0.6
121,923 - EX28DRAFT_2818 0.88 +0.1
122,028 - +0.1
122,028 - +0.3
122,047 + +0.1
122,048 - EX28DRAFT_2819 0.10 +0.2
122,048 - EX28DRAFT_2819 0.10 +0.1
122,193 - EX28DRAFT_2819 0.63 +1.4
122,301 + -1.4
122,380 - +0.4
122,380 - -3.8
122,661 + EX28DRAFT_2820 0.33 -1.2
122,661 + EX28DRAFT_2820 0.33 +0.1
122,662 - EX28DRAFT_2820 0.33 +0.1
122,662 - EX28DRAFT_2820 0.33 +0.4
122,754 - EX28DRAFT_2820 0.41 +0.8
122,823 - EX28DRAFT_2820 0.47 +0.0
122,823 - EX28DRAFT_2820 0.47 +0.9
122,946 + EX28DRAFT_2820 0.58 +0.5
122,947 - EX28DRAFT_2820 0.58 +0.5
122,989 + EX28DRAFT_2820 0.62 -0.1
122,989 + EX28DRAFT_2820 0.62 -0.6
122,989 + EX28DRAFT_2820 0.62 +0.3

Or see this region's nucleotide sequence