Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2702

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2701 and EX28DRAFT_2702 are separated by 10 nucleotidesEX28DRAFT_2702 and EX28DRAFT_2703 are separated by 214 nucleotidesEX28DRAFT_2703 and EX28DRAFT_2704 are separated by 92 nucleotides EX28DRAFT_2701: EX28DRAFT_2701 - chorismate mutase (EC 5.4.99.5), at 8,751 to 9,872 _2701 EX28DRAFT_2702: EX28DRAFT_2702 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 9,883 to 10,953 _2702 EX28DRAFT_2703: EX28DRAFT_2703 - Protein of unknown function (DUF2799), at 11,168 to 11,542 _2703 EX28DRAFT_2704: EX28DRAFT_2704 - Domain of unknown function (DUF4154), at 11,635 to 12,231 _2704 Position (kb) 9 10 11Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 8.911 kb on + strand, within EX28DRAFT_2701at 8.912 kb on - strand, within EX28DRAFT_2701at 8.951 kb on + strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.955 kb on - strand, within EX28DRAFT_2701at 8.966 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.023 kb on + strand, within EX28DRAFT_2701at 9.625 kb on + strand, within EX28DRAFT_2701at 9.872 kb on + strandat 9.873 kb on - strandat 9.877 kb on - strandat 9.884 kb on + strandat 9.885 kb on - strandat 10.031 kb on - strand, within EX28DRAFT_2702at 10.134 kb on + strand, within EX28DRAFT_2702at 10.159 kb on + strand, within EX28DRAFT_2702at 10.160 kb on - strand, within EX28DRAFT_2702at 10.233 kb on + strand, within EX28DRAFT_2702at 10.233 kb on + strand, within EX28DRAFT_2702at 10.297 kb on + strand, within EX28DRAFT_2702at 10.297 kb on + strand, within EX28DRAFT_2702at 10.298 kb on - strand, within EX28DRAFT_2702at 10.689 kb on - strand, within EX28DRAFT_2702at 10.737 kb on - strand, within EX28DRAFT_2702at 10.780 kb on + strand, within EX28DRAFT_2702at 10.924 kb on - strandat 10.924 kb on - strandat 10.924 kb on - strandat 10.924 kb on - strandat 10.927 kb on + strandat 10.927 kb on + strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 10.928 kb on - strandat 11.076 kb on + strandat 11.311 kb on + strand, within EX28DRAFT_2703at 11.364 kb on - strand, within EX28DRAFT_2703at 11.413 kb on + strand, within EX28DRAFT_2703at 11.518 kb on + strandat 11.518 kb on + strandat 11.540 kb on + strandat 11.545 kb on + strandat 11.576 kb on - strandat 11.588 kb on - strandat 11.604 kb on - strandat 11.614 kb on + strandat 11.615 kb on - strandat 11.657 kb on + strandat 11.657 kb on + strandat 11.667 kb on + strandat 11.668 kb on - strandat 11.668 kb on - strandat 11.668 kb on - strandat 11.668 kb on - strandat 11.754 kb on + strand, within EX28DRAFT_2704at 11.754 kb on + strand, within EX28DRAFT_2704at 11.755 kb on - strand, within EX28DRAFT_2704at 11.755 kb on - strand, within EX28DRAFT_2704at 11.784 kb on + strand, within EX28DRAFT_2704at 11.866 kb on - strand, within EX28DRAFT_2704at 11.896 kb on - strand, within EX28DRAFT_2704at 11.934 kb on - strand, within EX28DRAFT_2704at 11.939 kb on - strand, within EX28DRAFT_2704at 11.939 kb on - strand, within EX28DRAFT_2704at 11.941 kb on - strand, within EX28DRAFT_2704

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
8,911 + EX28DRAFT_2701 0.14 -4.2
8,912 - EX28DRAFT_2701 0.14 -2.5
8,951 + EX28DRAFT_2701 0.18 -4.8
8,952 - EX28DRAFT_2701 0.18 -4.8
8,952 - EX28DRAFT_2701 0.18 -2.0
8,952 - EX28DRAFT_2701 0.18 -2.0
8,955 - EX28DRAFT_2701 0.18 -4.3
8,966 - EX28DRAFT_2701 0.19 -4.3
9,020 - EX28DRAFT_2701 0.24 -8.3
9,020 - EX28DRAFT_2701 0.24 -2.8
9,020 - EX28DRAFT_2701 0.24 -4.2
9,023 + EX28DRAFT_2701 0.24 -4.5
9,625 + EX28DRAFT_2701 0.78 -5.9
9,872 + -2.6
9,873 - -5.0
9,877 - -6.1
9,884 + -3.2
9,885 - -0.3
10,031 - EX28DRAFT_2702 0.14 -0.6
10,134 + EX28DRAFT_2702 0.23 -5.0
10,159 + EX28DRAFT_2702 0.26 -5.0
10,160 - EX28DRAFT_2702 0.26 -1.0
10,233 + EX28DRAFT_2702 0.33 -2.0
10,233 + EX28DRAFT_2702 0.33 -0.9
10,297 + EX28DRAFT_2702 0.39 -2.0
10,297 + EX28DRAFT_2702 0.39 -2.6
10,298 - EX28DRAFT_2702 0.39 -0.7
10,689 - EX28DRAFT_2702 0.75 -1.1
10,737 - EX28DRAFT_2702 0.80 -0.4
10,780 + EX28DRAFT_2702 0.84 -3.4
10,924 - -4.4
10,924 - -1.2
10,924 - -1.3
10,924 - +0.4
10,927 + -2.6
10,927 + -2.1
10,928 - -2.8
10,928 - -0.4
10,928 - +0.1
10,928 - +0.7
10,928 - -2.4
10,928 - -5.4
11,076 + -3.7
11,311 + EX28DRAFT_2703 0.38 +0.2
11,364 - EX28DRAFT_2703 0.52 -0.6
11,413 + EX28DRAFT_2703 0.65 +0.2
11,518 + -0.0
11,518 + -2.3
11,540 + -1.1
11,545 + -0.4
11,576 - -0.5
11,588 - +0.3
11,604 - +0.3
11,614 + +0.6
11,615 - +0.3
11,657 + -0.2
11,657 + -1.0
11,667 + -1.0
11,668 - +0.2
11,668 - -0.2
11,668 - -1.2
11,668 - +0.2
11,754 + EX28DRAFT_2704 0.20 -1.1
11,754 + EX28DRAFT_2704 0.20 +0.0
11,755 - EX28DRAFT_2704 0.20 +0.8
11,755 - EX28DRAFT_2704 0.20 +0.7
11,784 + EX28DRAFT_2704 0.25 -0.3
11,866 - EX28DRAFT_2704 0.39 +0.1
11,896 - EX28DRAFT_2704 0.44 -1.0
11,934 - EX28DRAFT_2704 0.50 -0.2
11,939 - EX28DRAFT_2704 0.51 -0.4
11,939 - EX28DRAFT_2704 0.51 -0.6
11,941 - EX28DRAFT_2704 0.51 +0.0

Or see this region's nucleotide sequence