Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2701 and EX28DRAFT_2702 are separated by 10 nucleotides EX28DRAFT_2702 and EX28DRAFT_2703 are separated by 214 nucleotides EX28DRAFT_2703 and EX28DRAFT_2704 are separated by 92 nucleotides
EX28DRAFT_2701: EX28DRAFT_2701 - chorismate mutase (EC 5.4.99.5), at 8,751 to 9,872
_2701
EX28DRAFT_2702: EX28DRAFT_2702 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 9,883 to 10,953
_2702
EX28DRAFT_2703: EX28DRAFT_2703 - Protein of unknown function (DUF2799), at 11,168 to 11,542
_2703
EX28DRAFT_2704: EX28DRAFT_2704 - Domain of unknown function (DUF4154), at 11,635 to 12,231
_2704
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 8.911 kb on + strand, within EX28DRAFT_2701 at 8.912 kb on - strand, within EX28DRAFT_2701 at 8.951 kb on + strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.955 kb on - strand, within EX28DRAFT_2701 at 8.966 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.023 kb on + strand, within EX28DRAFT_2701 at 9.625 kb on + strand, within EX28DRAFT_2701 at 9.872 kb on + strand at 9.873 kb on - strand at 9.877 kb on - strand at 9.884 kb on + strand at 9.885 kb on - strand at 10.031 kb on - strand, within EX28DRAFT_2702 at 10.134 kb on + strand, within EX28DRAFT_2702 at 10.159 kb on + strand, within EX28DRAFT_2702 at 10.160 kb on - strand, within EX28DRAFT_2702 at 10.233 kb on + strand, within EX28DRAFT_2702 at 10.233 kb on + strand, within EX28DRAFT_2702 at 10.297 kb on + strand, within EX28DRAFT_2702 at 10.297 kb on + strand, within EX28DRAFT_2702 at 10.298 kb on - strand, within EX28DRAFT_2702 at 10.689 kb on - strand, within EX28DRAFT_2702 at 10.737 kb on - strand, within EX28DRAFT_2702 at 10.780 kb on + strand, within EX28DRAFT_2702 at 10.924 kb on - strand at 10.924 kb on - strand at 10.924 kb on - strand at 10.924 kb on - strand at 10.927 kb on + strand at 10.927 kb on + strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 11.076 kb on + strand at 11.311 kb on + strand, within EX28DRAFT_2703 at 11.364 kb on - strand, within EX28DRAFT_2703 at 11.413 kb on + strand, within EX28DRAFT_2703 at 11.518 kb on + strand at 11.518 kb on + strand at 11.540 kb on + strand at 11.545 kb on + strand at 11.576 kb on - strand at 11.588 kb on - strand at 11.604 kb on - strand at 11.614 kb on + strand at 11.615 kb on - strand at 11.657 kb on + strand at 11.657 kb on + strand at 11.667 kb on + strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.754 kb on + strand, within EX28DRAFT_2704 at 11.754 kb on + strand, within EX28DRAFT_2704 at 11.755 kb on - strand, within EX28DRAFT_2704 at 11.755 kb on - strand, within EX28DRAFT_2704 at 11.784 kb on + strand, within EX28DRAFT_2704 at 11.866 kb on - strand, within EX28DRAFT_2704 at 11.896 kb on - strand, within EX28DRAFT_2704 at 11.934 kb on - strand, within EX28DRAFT_2704 at 11.939 kb on - strand, within EX28DRAFT_2704 at 11.939 kb on - strand, within EX28DRAFT_2704 at 11.941 kb on - strand, within EX28DRAFT_2704
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 8,911 + EX28DRAFT_2701 0.14 -4.2 8,912 - EX28DRAFT_2701 0.14 -2.5 8,951 + EX28DRAFT_2701 0.18 -4.8 8,952 - EX28DRAFT_2701 0.18 -4.8 8,952 - EX28DRAFT_2701 0.18 -2.0 8,952 - EX28DRAFT_2701 0.18 -2.0 8,955 - EX28DRAFT_2701 0.18 -4.3 8,966 - EX28DRAFT_2701 0.19 -4.3 9,020 - EX28DRAFT_2701 0.24 -8.3 9,020 - EX28DRAFT_2701 0.24 -2.8 9,020 - EX28DRAFT_2701 0.24 -4.2 9,023 + EX28DRAFT_2701 0.24 -4.5 9,625 + EX28DRAFT_2701 0.78 -5.9 9,872 + -2.6 9,873 - -5.0 9,877 - -6.1 9,884 + -3.2 9,885 - -0.3 10,031 - EX28DRAFT_2702 0.14 -0.6 10,134 + EX28DRAFT_2702 0.23 -5.0 10,159 + EX28DRAFT_2702 0.26 -5.0 10,160 - EX28DRAFT_2702 0.26 -1.0 10,233 + EX28DRAFT_2702 0.33 -2.0 10,233 + EX28DRAFT_2702 0.33 -0.9 10,297 + EX28DRAFT_2702 0.39 -2.0 10,297 + EX28DRAFT_2702 0.39 -2.6 10,298 - EX28DRAFT_2702 0.39 -0.7 10,689 - EX28DRAFT_2702 0.75 -1.1 10,737 - EX28DRAFT_2702 0.80 -0.4 10,780 + EX28DRAFT_2702 0.84 -3.4 10,924 - -4.4 10,924 - -1.2 10,924 - -1.3 10,924 - +0.4 10,927 + -2.6 10,927 + -2.1 10,928 - -2.8 10,928 - -0.4 10,928 - +0.1 10,928 - +0.7 10,928 - -2.4 10,928 - -5.4 11,076 + -3.7 11,311 + EX28DRAFT_2703 0.38 +0.2 11,364 - EX28DRAFT_2703 0.52 -0.6 11,413 + EX28DRAFT_2703 0.65 +0.2 11,518 + -0.0 11,518 + -2.3 11,540 + -1.1 11,545 + -0.4 11,576 - -0.5 11,588 - +0.3 11,604 - +0.3 11,614 + +0.6 11,615 - +0.3 11,657 + -0.2 11,657 + -1.0 11,667 + -1.0 11,668 - +0.2 11,668 - -0.2 11,668 - -1.2 11,668 - +0.2 11,754 + EX28DRAFT_2704 0.20 -1.1 11,754 + EX28DRAFT_2704 0.20 +0.0 11,755 - EX28DRAFT_2704 0.20 +0.8 11,755 - EX28DRAFT_2704 0.20 +0.7 11,784 + EX28DRAFT_2704 0.25 -0.3 11,866 - EX28DRAFT_2704 0.39 +0.1 11,896 - EX28DRAFT_2704 0.44 -1.0 11,934 - EX28DRAFT_2704 0.50 -0.2 11,939 - EX28DRAFT_2704 0.51 -0.4 11,939 - EX28DRAFT_2704 0.51 -0.6 11,941 - EX28DRAFT_2704 0.51 +0.0
Or see this region's nucleotide sequence