Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2701

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2699 and EX28DRAFT_2700 overlap by 4 nucleotidesEX28DRAFT_2700 and EX28DRAFT_2701 are separated by 60 nucleotidesEX28DRAFT_2701 and EX28DRAFT_2702 are separated by 10 nucleotides EX28DRAFT_2699: EX28DRAFT_2699 - chorismate mutase (EC 5.4.99.5), at 6,661 to 7,821 _2699 EX28DRAFT_2700: EX28DRAFT_2700 - Gluconolactonase, at 7,818 to 8,690 _2700 EX28DRAFT_2701: EX28DRAFT_2701 - chorismate mutase (EC 5.4.99.5), at 8,751 to 9,872 _2701 EX28DRAFT_2702: EX28DRAFT_2702 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 9,883 to 10,953 _2702 Position (kb) 8 9 10Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 7.820 kb on - strandat 7.894 kb on + strandat 7.919 kb on + strand, within EX28DRAFT_2700at 7.940 kb on + strand, within EX28DRAFT_2700at 7.941 kb on - strand, within EX28DRAFT_2700at 8.327 kb on - strand, within EX28DRAFT_2700at 8.391 kb on - strand, within EX28DRAFT_2700at 8.475 kb on - strand, within EX28DRAFT_2700at 8.608 kb on + strandat 8.663 kb on - strandat 8.663 kb on - strandat 8.736 kb on - strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.911 kb on + strand, within EX28DRAFT_2701at 8.912 kb on - strand, within EX28DRAFT_2701at 8.951 kb on + strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.952 kb on - strand, within EX28DRAFT_2701at 8.955 kb on - strand, within EX28DRAFT_2701at 8.966 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.020 kb on - strand, within EX28DRAFT_2701at 9.023 kb on + strand, within EX28DRAFT_2701at 9.625 kb on + strand, within EX28DRAFT_2701at 9.872 kb on + strandat 9.873 kb on - strandat 9.877 kb on - strandat 9.884 kb on + strandat 9.885 kb on - strandat 10.031 kb on - strand, within EX28DRAFT_2702at 10.134 kb on + strand, within EX28DRAFT_2702at 10.159 kb on + strand, within EX28DRAFT_2702at 10.160 kb on - strand, within EX28DRAFT_2702at 10.233 kb on + strand, within EX28DRAFT_2702at 10.233 kb on + strand, within EX28DRAFT_2702at 10.297 kb on + strand, within EX28DRAFT_2702at 10.297 kb on + strand, within EX28DRAFT_2702at 10.298 kb on - strand, within EX28DRAFT_2702at 10.689 kb on - strand, within EX28DRAFT_2702at 10.737 kb on - strand, within EX28DRAFT_2702at 10.780 kb on + strand, within EX28DRAFT_2702

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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7,820 - -0.6
7,894 + +0.0
7,919 + EX28DRAFT_2700 0.12 +0.6
7,940 + EX28DRAFT_2700 0.14 +0.6
7,941 - EX28DRAFT_2700 0.14 -0.3
8,327 - EX28DRAFT_2700 0.58 +0.3
8,391 - EX28DRAFT_2700 0.66 +0.7
8,475 - EX28DRAFT_2700 0.75 -0.3
8,608 + +0.1
8,663 - +0.6
8,663 - -0.3
8,736 - +0.0
8,739 + +0.6
8,739 + -0.3
8,739 + -0.0
8,739 + -0.5
8,739 + -0.0
8,740 - +0.5
8,740 - +0.4
8,740 - -1.1
8,740 - +0.9
8,911 + EX28DRAFT_2701 0.14 -4.2
8,912 - EX28DRAFT_2701 0.14 -2.5
8,951 + EX28DRAFT_2701 0.18 -4.8
8,952 - EX28DRAFT_2701 0.18 -4.8
8,952 - EX28DRAFT_2701 0.18 -2.0
8,952 - EX28DRAFT_2701 0.18 -2.0
8,955 - EX28DRAFT_2701 0.18 -4.3
8,966 - EX28DRAFT_2701 0.19 -4.3
9,020 - EX28DRAFT_2701 0.24 -8.3
9,020 - EX28DRAFT_2701 0.24 -2.8
9,020 - EX28DRAFT_2701 0.24 -4.2
9,023 + EX28DRAFT_2701 0.24 -4.5
9,625 + EX28DRAFT_2701 0.78 -5.9
9,872 + -2.6
9,873 - -5.0
9,877 - -6.1
9,884 + -3.2
9,885 - -0.3
10,031 - EX28DRAFT_2702 0.14 -0.6
10,134 + EX28DRAFT_2702 0.23 -5.0
10,159 + EX28DRAFT_2702 0.26 -5.0
10,160 - EX28DRAFT_2702 0.26 -1.0
10,233 + EX28DRAFT_2702 0.33 -2.0
10,233 + EX28DRAFT_2702 0.33 -0.9
10,297 + EX28DRAFT_2702 0.39 -2.0
10,297 + EX28DRAFT_2702 0.39 -2.6
10,298 - EX28DRAFT_2702 0.39 -0.7
10,689 - EX28DRAFT_2702 0.75 -1.1
10,737 - EX28DRAFT_2702 0.80 -0.4
10,780 + EX28DRAFT_2702 0.84 -3.4

Or see this region's nucleotide sequence