Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2699

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2696 and EX28DRAFT_2697 are separated by 274 nucleotidesEX28DRAFT_2697 and EX28DRAFT_2698 are separated by 110 nucleotidesEX28DRAFT_2698 and EX28DRAFT_2699 are separated by 30 nucleotidesEX28DRAFT_2699 and EX28DRAFT_2700 overlap by 4 nucleotidesEX28DRAFT_2700 and EX28DRAFT_2701 are separated by 60 nucleotides EX28DRAFT_2696: EX28DRAFT_2696 - Beta-barrel assembly machine subunit BamD, at 5,041 to 5,778 _2696 EX28DRAFT_2697: EX28DRAFT_2697 - ribosomal subunit interface protein, at 6,053 to 6,394 _2697 EX28DRAFT_2698: EX28DRAFT_2698 - RNA, at 6,505 to 6,630 _2698 EX28DRAFT_2699: EX28DRAFT_2699 - chorismate mutase (EC 5.4.99.5), at 6,661 to 7,821 _2699 EX28DRAFT_2700: EX28DRAFT_2700 - Gluconolactonase, at 7,818 to 8,690 _2700 EX28DRAFT_2701: EX28DRAFT_2701 - chorismate mutase (EC 5.4.99.5), at 8,751 to 9,872 _2701 Position (kb) 6 7 8Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5.839 kb on - strandat 5.883 kb on - strandat 6.002 kb on + strandat 6.003 kb on - strandat 6.046 kb on - strandat 6.212 kb on - strand, within EX28DRAFT_2697at 6.212 kb on - strand, within EX28DRAFT_2697at 6.212 kb on - strand, within EX28DRAFT_2697at 6.212 kb on - strand, within EX28DRAFT_2697at 6.217 kb on + strand, within EX28DRAFT_2697at 6.217 kb on + strand, within EX28DRAFT_2697at 6.260 kb on - strand, within EX28DRAFT_2697at 6.263 kb on + strand, within EX28DRAFT_2697at 6.264 kb on - strand, within EX28DRAFT_2697at 6.392 kb on + strandat 6.392 kb on + strandat 6.393 kb on - strandat 6.393 kb on - strandat 6.629 kb on - strandat 6.640 kb on + strandat 6.660 kb on + strandat 6.660 kb on + strandat 6.660 kb on + strandat 6.661 kb on - strandat 6.661 kb on - strandat 6.874 kb on + strand, within EX28DRAFT_2699at 6.875 kb on - strand, within EX28DRAFT_2699at 6.952 kb on - strand, within EX28DRAFT_2699at 7.004 kb on - strand, within EX28DRAFT_2699at 7.027 kb on + strand, within EX28DRAFT_2699at 7.028 kb on - strand, within EX28DRAFT_2699at 7.053 kb on + strand, within EX28DRAFT_2699at 7.168 kb on + strand, within EX28DRAFT_2699at 7.169 kb on - strand, within EX28DRAFT_2699at 7.441 kb on + strand, within EX28DRAFT_2699at 7.455 kb on - strand, within EX28DRAFT_2699at 7.687 kb on + strand, within EX28DRAFT_2699at 7.687 kb on + strand, within EX28DRAFT_2699at 7.688 kb on - strand, within EX28DRAFT_2699at 7.688 kb on - strand, within EX28DRAFT_2699at 7.820 kb on - strandat 7.894 kb on + strandat 7.919 kb on + strand, within EX28DRAFT_2700at 7.940 kb on + strand, within EX28DRAFT_2700at 7.941 kb on - strand, within EX28DRAFT_2700at 8.327 kb on - strand, within EX28DRAFT_2700at 8.391 kb on - strand, within EX28DRAFT_2700at 8.475 kb on - strand, within EX28DRAFT_2700at 8.608 kb on + strandat 8.663 kb on - strandat 8.663 kb on - strandat 8.736 kb on - strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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5,839 - +0.1
5,883 - +0.3
6,002 + -0.1
6,003 - -0.1
6,046 - -0.2
6,212 - EX28DRAFT_2697 0.46 +0.0
6,212 - EX28DRAFT_2697 0.46 +1.0
6,212 - EX28DRAFT_2697 0.46 +0.0
6,212 - EX28DRAFT_2697 0.46 +0.6
6,217 + EX28DRAFT_2697 0.48 +0.4
6,217 + EX28DRAFT_2697 0.48 +0.2
6,260 - EX28DRAFT_2697 0.61 +0.4
6,263 + EX28DRAFT_2697 0.61 +0.1
6,264 - EX28DRAFT_2697 0.62 -0.2
6,392 + +0.5
6,392 + -0.1
6,393 - +1.3
6,393 - +0.0
6,629 - -3.6
6,640 + +0.0
6,660 + -4.9
6,660 + -4.2
6,660 + -4.1
6,661 - -4.6
6,661 - -5.0
6,874 + EX28DRAFT_2699 0.18 -1.8
6,875 - EX28DRAFT_2699 0.18 -5.6
6,952 - EX28DRAFT_2699 0.25 +0.0
7,004 - EX28DRAFT_2699 0.30 -2.8
7,027 + EX28DRAFT_2699 0.32 -5.1
7,028 - EX28DRAFT_2699 0.32 -4.0
7,053 + EX28DRAFT_2699 0.34 -3.9
7,168 + EX28DRAFT_2699 0.44 -3.4
7,169 - EX28DRAFT_2699 0.44 -2.8
7,441 + EX28DRAFT_2699 0.67 -4.8
7,455 - EX28DRAFT_2699 0.68 -3.6
7,687 + EX28DRAFT_2699 0.88 -6.2
7,687 + EX28DRAFT_2699 0.88 -1.0
7,688 - EX28DRAFT_2699 0.88 -3.0
7,688 - EX28DRAFT_2699 0.88 -2.7
7,820 - -0.6
7,894 + +0.0
7,919 + EX28DRAFT_2700 0.12 +0.6
7,940 + EX28DRAFT_2700 0.14 +0.6
7,941 - EX28DRAFT_2700 0.14 -0.3
8,327 - EX28DRAFT_2700 0.58 +0.3
8,391 - EX28DRAFT_2700 0.66 +0.7
8,475 - EX28DRAFT_2700 0.75 -0.3
8,608 + +0.1
8,663 - +0.6
8,663 - -0.3
8,736 - +0.0
8,739 + +0.6
8,739 + -0.3
8,739 + -0.0
8,739 + -0.5
8,739 + -0.0
8,740 - +0.5
8,740 - +0.4
8,740 - -1.1
8,740 - +0.9

Or see this region's nucleotide sequence