Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2650

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2648 and EX28DRAFT_2649 are separated by 163 nucleotidesEX28DRAFT_2649 and EX28DRAFT_2650 are separated by 111 nucleotidesEX28DRAFT_2650 and EX28DRAFT_2651 are separated by 11 nucleotides EX28DRAFT_2648: EX28DRAFT_2648 - Integrase, at 2,685,568 to 2,686,743 _2648 EX28DRAFT_2649: EX28DRAFT_2649 - tRNA, at 2,686,907 to 2,686,982 _2649 EX28DRAFT_2650: EX28DRAFT_2650 - glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41), at 2,687,094 to 2,688,347 _2650 EX28DRAFT_2651: EX28DRAFT_2651 - glutamate 5-kinase, at 2,688,359 to 2,689,462 _2651 Position (kb) 2687 2688 2689Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2686.109 kb on - strand, within EX28DRAFT_2648at 2686.150 kb on + strand, within EX28DRAFT_2648at 2686.168 kb on + strand, within EX28DRAFT_2648at 2686.315 kb on + strand, within EX28DRAFT_2648at 2686.340 kb on - strand, within EX28DRAFT_2648at 2686.340 kb on - strand, within EX28DRAFT_2648at 2686.344 kb on - strand, within EX28DRAFT_2648at 2686.654 kb on + strandat 2686.654 kb on + strandat 2686.656 kb on + strandat 2686.656 kb on + strandat 2686.690 kb on - strandat 2686.691 kb on + strandat 2686.699 kb on - strandat 2686.776 kb on - strandat 2686.777 kb on + strandat 2686.778 kb on - strandat 2686.974 kb on + strand, within EX28DRAFT_2649at 2686.974 kb on + strand, within EX28DRAFT_2649at 2686.974 kb on + strand, within EX28DRAFT_2649at 2686.975 kb on - strandat 2687.024 kb on + strandat 2687.030 kb on + strandat 2687.031 kb on - strandat 2687.092 kb on - strandat 2687.108 kb on + strandat 2687.134 kb on + strandat 2687.436 kb on + strand, within EX28DRAFT_2650at 2687.580 kb on + strand, within EX28DRAFT_2650at 2687.588 kb on + strand, within EX28DRAFT_2650at 2687.625 kb on - strand, within EX28DRAFT_2650at 2687.771 kb on - strand, within EX28DRAFT_2650at 2687.829 kb on + strand, within EX28DRAFT_2650at 2687.928 kb on - strand, within EX28DRAFT_2650at 2687.992 kb on + strand, within EX28DRAFT_2650at 2687.992 kb on + strand, within EX28DRAFT_2650at 2687.992 kb on + strand, within EX28DRAFT_2650at 2687.993 kb on - strand, within EX28DRAFT_2650at 2688.403 kb on - strandat 2688.483 kb on - strand, within EX28DRAFT_2651at 2689.182 kb on + strand, within EX28DRAFT_2651at 2689.182 kb on + strand, within EX28DRAFT_2651at 2689.183 kb on - strand, within EX28DRAFT_2651at 2689.331 kb on - strand, within EX28DRAFT_2651at 2689.331 kb on - strand, within EX28DRAFT_2651at 2689.331 kb on - strand, within EX28DRAFT_2651

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,686,109 - EX28DRAFT_2648 0.46 +0.3
2,686,150 + EX28DRAFT_2648 0.49 +0.5
2,686,168 + EX28DRAFT_2648 0.51 -1.3
2,686,315 + EX28DRAFT_2648 0.64 +0.6
2,686,340 - EX28DRAFT_2648 0.66 -0.0
2,686,340 - EX28DRAFT_2648 0.66 +0.1
2,686,344 - EX28DRAFT_2648 0.66 -0.2
2,686,654 + -0.2
2,686,654 + +1.1
2,686,656 + -0.2
2,686,656 + +0.2
2,686,690 - -6.0
2,686,691 + +0.4
2,686,699 - -0.1
2,686,776 - +0.3
2,686,777 + -0.2
2,686,778 - -0.6
2,686,974 + EX28DRAFT_2649 0.88 -2.5
2,686,974 + EX28DRAFT_2649 0.88 -0.6
2,686,974 + EX28DRAFT_2649 0.88 +0.0
2,686,975 - +0.9
2,687,024 + +0.1
2,687,030 + -0.5
2,687,031 - +0.8
2,687,092 - +0.8
2,687,108 + -4.4
2,687,134 + -2.1
2,687,436 + EX28DRAFT_2650 0.27 -5.1
2,687,580 + EX28DRAFT_2650 0.39 -4.7
2,687,588 + EX28DRAFT_2650 0.39 -5.1
2,687,625 - EX28DRAFT_2650 0.42 -2.4
2,687,771 - EX28DRAFT_2650 0.54 -3.4
2,687,829 + EX28DRAFT_2650 0.59 -3.8
2,687,928 - EX28DRAFT_2650 0.67 -4.2
2,687,992 + EX28DRAFT_2650 0.72 -6.6
2,687,992 + EX28DRAFT_2650 0.72 -2.4
2,687,992 + EX28DRAFT_2650 0.72 -6.3
2,687,993 - EX28DRAFT_2650 0.72 -3.5
2,688,403 - -4.0
2,688,483 - EX28DRAFT_2651 0.11 -4.4
2,689,182 + EX28DRAFT_2651 0.75 -5.9
2,689,182 + EX28DRAFT_2651 0.75 -5.1
2,689,183 - EX28DRAFT_2651 0.75 -2.1
2,689,331 - EX28DRAFT_2651 0.88 -4.1
2,689,331 - EX28DRAFT_2651 0.88 -4.6
2,689,331 - EX28DRAFT_2651 0.88 -6.4

Or see this region's nucleotide sequence