Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2585

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2583 and EX28DRAFT_2584 are separated by 143 nucleotidesEX28DRAFT_2584 and EX28DRAFT_2585 are separated by 97 nucleotidesEX28DRAFT_2585 and EX28DRAFT_2586 are separated by 14 nucleotides EX28DRAFT_2583: EX28DRAFT_2583 - shikimate kinase (EC 2.7.1.71), at 2,618,901 to 2,619,425 _2583 EX28DRAFT_2584: EX28DRAFT_2584 - Uncharacterized protein conserved in bacteria, at 2,619,569 to 2,620,027 _2584 EX28DRAFT_2585: EX28DRAFT_2585 - pyrroline-5-carboxylate reductase, at 2,620,125 to 2,620,934 _2585 EX28DRAFT_2586: EX28DRAFT_2586 - diguanylate cyclase (GGDEF) domain, at 2,620,949 to 2,622,052 _2586 Position (kb) 2620 2621Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2619.156 kb on - strand, within EX28DRAFT_2583at 2619.157 kb on + strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.406 kb on - strandat 2619.499 kb on + strandat 2620.028 kb on - strandat 2620.028 kb on - strandat 2620.084 kb on + strandat 2620.107 kb on + strandat 2620.725 kb on + strand, within EX28DRAFT_2585at 2620.805 kb on + strand, within EX28DRAFT_2585at 2620.806 kb on - strand, within EX28DRAFT_2585at 2621.032 kb on - strandat 2621.308 kb on + strand, within EX28DRAFT_2586at 2621.458 kb on + strand, within EX28DRAFT_2586at 2621.458 kb on + strand, within EX28DRAFT_2586at 2621.458 kb on + strand, within EX28DRAFT_2586at 2621.459 kb on - strand, within EX28DRAFT_2586at 2621.549 kb on + strand, within EX28DRAFT_2586at 2621.549 kb on + strand, within EX28DRAFT_2586at 2621.549 kb on + strand, within EX28DRAFT_2586at 2621.850 kb on - strand, within EX28DRAFT_2586

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,619,156 - EX28DRAFT_2583 0.49 -1.5
2,619,157 + EX28DRAFT_2583 0.49 +0.5
2,619,158 - EX28DRAFT_2583 0.49 +0.6
2,619,158 - EX28DRAFT_2583 0.49 -0.3
2,619,158 - EX28DRAFT_2583 0.49 +0.3
2,619,158 - EX28DRAFT_2583 0.49 +0.5
2,619,158 - EX28DRAFT_2583 0.49 -1.9
2,619,158 - EX28DRAFT_2583 0.49 +0.3
2,619,406 - +1.8
2,619,499 + +0.4
2,620,028 - +0.8
2,620,028 - +0.2
2,620,084 + +0.2
2,620,107 + -1.4
2,620,725 + EX28DRAFT_2585 0.74 -2.7
2,620,805 + EX28DRAFT_2585 0.84 -5.2
2,620,806 - EX28DRAFT_2585 0.84 -3.4
2,621,032 - +0.0
2,621,308 + EX28DRAFT_2586 0.33 +0.6
2,621,458 + EX28DRAFT_2586 0.46 -0.0
2,621,458 + EX28DRAFT_2586 0.46 -0.4
2,621,458 + EX28DRAFT_2586 0.46 +0.6
2,621,459 - EX28DRAFT_2586 0.46 +1.2
2,621,549 + EX28DRAFT_2586 0.54 -0.6
2,621,549 + EX28DRAFT_2586 0.54 +0.3
2,621,549 + EX28DRAFT_2586 0.54 +0.2
2,621,850 - EX28DRAFT_2586 0.82 +0.0

Or see this region's nucleotide sequence