Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2575

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2574 and EX28DRAFT_2575 are separated by 21 nucleotidesEX28DRAFT_2575 and EX28DRAFT_2576 are separated by 187 nucleotides EX28DRAFT_2574: EX28DRAFT_2574 - phosphate regulon sensor kinase PhoR, at 2,608,796 to 2,610,091 _2574 EX28DRAFT_2575: EX28DRAFT_2575 - phosphate regulon transcriptional regulatory protein PhoB, at 2,610,113 to 2,610,802 _2575 EX28DRAFT_2576: EX28DRAFT_2576 - Exodeoxyribonuclease I subunit D (EC 3.1.11.1), at 2,610,990 to 2,612,195 _2576 Position (kb) 2610 2611Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2609.113 kb on - strand, within EX28DRAFT_2574at 2609.171 kb on - strand, within EX28DRAFT_2574at 2609.539 kb on + strand, within EX28DRAFT_2574at 2609.629 kb on - strand, within EX28DRAFT_2574at 2609.834 kb on - strand, within EX28DRAFT_2574at 2609.837 kb on - strand, within EX28DRAFT_2574at 2609.862 kb on + strand, within EX28DRAFT_2574at 2609.905 kb on + strand, within EX28DRAFT_2574at 2609.906 kb on - strand, within EX28DRAFT_2574at 2610.044 kb on + strandat 2610.044 kb on + strandat 2610.208 kb on + strand, within EX28DRAFT_2575at 2610.212 kb on + strand, within EX28DRAFT_2575at 2610.213 kb on - strand, within EX28DRAFT_2575at 2610.213 kb on - strand, within EX28DRAFT_2575at 2610.213 kb on - strand, within EX28DRAFT_2575at 2610.213 kb on - strand, within EX28DRAFT_2575at 2610.237 kb on + strand, within EX28DRAFT_2575at 2610.238 kb on - strand, within EX28DRAFT_2575at 2610.238 kb on - strand, within EX28DRAFT_2575at 2610.238 kb on - strand, within EX28DRAFT_2575at 2610.244 kb on + strand, within EX28DRAFT_2575at 2610.259 kb on + strand, within EX28DRAFT_2575at 2610.331 kb on + strand, within EX28DRAFT_2575at 2610.455 kb on - strand, within EX28DRAFT_2575at 2610.455 kb on - strand, within EX28DRAFT_2575at 2610.493 kb on + strand, within EX28DRAFT_2575at 2610.493 kb on + strand, within EX28DRAFT_2575at 2610.498 kb on + strand, within EX28DRAFT_2575at 2610.498 kb on + strand, within EX28DRAFT_2575at 2610.498 kb on + strand, within EX28DRAFT_2575at 2610.499 kb on - strand, within EX28DRAFT_2575at 2610.700 kb on - strand, within EX28DRAFT_2575at 2610.779 kb on + strandat 2610.779 kb on + strandat 2610.791 kb on - strandat 2610.818 kb on - strandat 2610.818 kb on - strandat 2610.822 kb on + strandat 2610.855 kb on + strandat 2610.856 kb on - strandat 2610.856 kb on - strandat 2610.919 kb on + strandat 2610.919 kb on + strandat 2610.920 kb on - strandat 2610.955 kb on + strandat 2610.955 kb on + strandat 2610.956 kb on - strandat 2610.989 kb on + strandat 2610.989 kb on + strandat 2610.997 kb on + strandat 2610.997 kb on + strandat 2610.997 kb on + strandat 2611.162 kb on - strand, within EX28DRAFT_2576at 2611.162 kb on - strand, within EX28DRAFT_2576at 2611.176 kb on + strand, within EX28DRAFT_2576at 2611.447 kb on + strand, within EX28DRAFT_2576at 2611.448 kb on - strand, within EX28DRAFT_2576at 2611.467 kb on + strand, within EX28DRAFT_2576at 2611.467 kb on + strand, within EX28DRAFT_2576at 2611.576 kb on + strand, within EX28DRAFT_2576at 2611.576 kb on + strand, within EX28DRAFT_2576at 2611.577 kb on - strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.587 kb on + strand, within EX28DRAFT_2576at 2611.588 kb on - strand, within EX28DRAFT_2576at 2611.588 kb on - strand, within EX28DRAFT_2576at 2611.588 kb on - strand, within EX28DRAFT_2576at 2611.588 kb on - strand, within EX28DRAFT_2576at 2611.588 kb on - strand, within EX28DRAFT_2576at 2611.588 kb on - strand, within EX28DRAFT_2576at 2611.588 kb on - strand, within EX28DRAFT_2576at 2611.639 kb on - strand, within EX28DRAFT_2576

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,609,113 - EX28DRAFT_2574 0.24 -0.8
2,609,171 - EX28DRAFT_2574 0.29 -0.4
2,609,539 + EX28DRAFT_2574 0.57 +0.6
2,609,629 - EX28DRAFT_2574 0.64 +0.2
2,609,834 - EX28DRAFT_2574 0.80 +0.2
2,609,837 - EX28DRAFT_2574 0.80 +0.2
2,609,862 + EX28DRAFT_2574 0.82 -3.4
2,609,905 + EX28DRAFT_2574 0.86 +0.0
2,609,906 - EX28DRAFT_2574 0.86 -0.0
2,610,044 + -0.6
2,610,044 + -2.4
2,610,208 + EX28DRAFT_2575 0.14 +1.4
2,610,212 + EX28DRAFT_2575 0.14 +0.6
2,610,213 - EX28DRAFT_2575 0.14 +0.2
2,610,213 - EX28DRAFT_2575 0.14 +1.2
2,610,213 - EX28DRAFT_2575 0.14 -0.4
2,610,213 - EX28DRAFT_2575 0.14 +0.3
2,610,237 + EX28DRAFT_2575 0.18 +0.5
2,610,238 - EX28DRAFT_2575 0.18 +0.5
2,610,238 - EX28DRAFT_2575 0.18 -0.1
2,610,238 - EX28DRAFT_2575 0.18 +0.8
2,610,244 + EX28DRAFT_2575 0.19 +1.4
2,610,259 + EX28DRAFT_2575 0.21 +0.4
2,610,331 + EX28DRAFT_2575 0.32 +0.9
2,610,455 - EX28DRAFT_2575 0.50 -0.3
2,610,455 - EX28DRAFT_2575 0.50 -0.8
2,610,493 + EX28DRAFT_2575 0.55 +0.3
2,610,493 + EX28DRAFT_2575 0.55 +1.1
2,610,498 + EX28DRAFT_2575 0.56 +0.2
2,610,498 + EX28DRAFT_2575 0.56 +0.4
2,610,498 + EX28DRAFT_2575 0.56 +0.8
2,610,499 - EX28DRAFT_2575 0.56 -2.4
2,610,700 - EX28DRAFT_2575 0.85 -1.1
2,610,779 + -1.0
2,610,779 + +0.7
2,610,791 - -0.2
2,610,818 - -0.1
2,610,818 - +0.0
2,610,822 + -1.3
2,610,855 + +0.3
2,610,856 - +0.4
2,610,856 - +0.0
2,610,919 + +0.3
2,610,919 + +0.1
2,610,920 - -0.4
2,610,955 + -1.7
2,610,955 + -0.1
2,610,956 - -1.3
2,610,989 + -0.2
2,610,989 + -1.4
2,610,997 + -0.1
2,610,997 + +0.4
2,610,997 + -1.0
2,611,162 - EX28DRAFT_2576 0.14 -0.3
2,611,162 - EX28DRAFT_2576 0.14 +0.2
2,611,176 + EX28DRAFT_2576 0.15 +1.0
2,611,447 + EX28DRAFT_2576 0.38 +0.4
2,611,448 - EX28DRAFT_2576 0.38 +0.0
2,611,467 + EX28DRAFT_2576 0.40 +0.2
2,611,467 + EX28DRAFT_2576 0.40 +0.0
2,611,576 + EX28DRAFT_2576 0.49 +1.1
2,611,576 + EX28DRAFT_2576 0.49 +0.4
2,611,577 - EX28DRAFT_2576 0.49 +1.3
2,611,587 + EX28DRAFT_2576 0.50 +1.6
2,611,587 + EX28DRAFT_2576 0.50 -0.1
2,611,587 + EX28DRAFT_2576 0.50 +0.7
2,611,587 + EX28DRAFT_2576 0.50 -1.3
2,611,587 + EX28DRAFT_2576 0.50 -0.0
2,611,587 + EX28DRAFT_2576 0.50 -0.6
2,611,587 + EX28DRAFT_2576 0.50 -0.5
2,611,587 + EX28DRAFT_2576 0.50 -1.2
2,611,588 - EX28DRAFT_2576 0.50 -0.4
2,611,588 - EX28DRAFT_2576 0.50 -0.7
2,611,588 - EX28DRAFT_2576 0.50 -0.0
2,611,588 - EX28DRAFT_2576 0.50 +0.7
2,611,588 - EX28DRAFT_2576 0.50 +0.2
2,611,588 - EX28DRAFT_2576 0.50 -3.8
2,611,588 - EX28DRAFT_2576 0.50 +0.2
2,611,639 - EX28DRAFT_2576 0.54 -0.2

Or see this region's nucleotide sequence