Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2364

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2363 and EX28DRAFT_2364 are separated by 159 nucleotidesEX28DRAFT_2364 and EX28DRAFT_2365 are separated by 57 nucleotidesEX28DRAFT_2365 and EX28DRAFT_2366 are separated by 183 nucleotides EX28DRAFT_2363: EX28DRAFT_2363 - ABC-type sugar transport system, ATPase component, at 2,383,569 to 2,385,071 _2363 EX28DRAFT_2364: EX28DRAFT_2364 - Glycerol dehydrogenase and related enzymes, at 2,385,231 to 2,386,319 _2364 EX28DRAFT_2365: EX28DRAFT_2365 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,386,377 to 2,387,120 _2365 EX28DRAFT_2366: EX28DRAFT_2366 - Cytotoxic translational repressor of toxin-antitoxin stability system, at 2,387,304 to 2,387,609 _2366 Position (kb) 2385 2386 2387Strain fitness (log2 ratio) -2 -1 0 1 2at 2384.329 kb on + strand, within EX28DRAFT_2363at 2384.478 kb on - strand, within EX28DRAFT_2363at 2384.505 kb on + strand, within EX28DRAFT_2363at 2384.879 kb on + strand, within EX28DRAFT_2363at 2384.880 kb on - strand, within EX28DRAFT_2363at 2384.899 kb on + strand, within EX28DRAFT_2363at 2384.973 kb on + strandat 2385.090 kb on - strandat 2385.172 kb on - strandat 2385.193 kb on + strandat 2385.193 kb on + strandat 2385.194 kb on - strandat 2385.214 kb on + strandat 2385.274 kb on - strandat 2385.274 kb on - strandat 2385.274 kb on - strandat 2385.351 kb on + strand, within EX28DRAFT_2364at 2385.351 kb on + strand, within EX28DRAFT_2364at 2385.979 kb on - strand, within EX28DRAFT_2364at 2385.979 kb on - strand, within EX28DRAFT_2364at 2386.044 kb on + strand, within EX28DRAFT_2364at 2386.146 kb on - strand, within EX28DRAFT_2364at 2386.249 kb on - strandat 2386.334 kb on + strandat 2386.334 kb on + strandat 2386.336 kb on + strandat 2386.341 kb on - strandat 2386.341 kb on - strandat 2386.354 kb on - strandat 2386.390 kb on + strandat 2386.390 kb on + strandat 2386.391 kb on - strandat 2386.391 kb on - strandat 2386.398 kb on - strandat 2386.482 kb on - strand, within EX28DRAFT_2365at 2386.484 kb on + strand, within EX28DRAFT_2365at 2386.484 kb on + strand, within EX28DRAFT_2365at 2386.485 kb on - strand, within EX28DRAFT_2365at 2386.485 kb on - strand, within EX28DRAFT_2365at 2386.787 kb on + strand, within EX28DRAFT_2365at 2386.824 kb on - strand, within EX28DRAFT_2365at 2386.953 kb on - strand, within EX28DRAFT_2365at 2387.219 kb on + strandat 2387.219 kb on + strandat 2387.252 kb on - strandat 2387.261 kb on - strandat 2387.263 kb on + strandat 2387.264 kb on - strandat 2387.288 kb on + strandat 2387.288 kb on + strandat 2387.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,384,329 + EX28DRAFT_2363 0.51 -0.7
2,384,478 - EX28DRAFT_2363 0.60 -0.3
2,384,505 + EX28DRAFT_2363 0.62 +0.9
2,384,879 + EX28DRAFT_2363 0.87 -2.1
2,384,880 - EX28DRAFT_2363 0.87 +0.1
2,384,899 + EX28DRAFT_2363 0.88 -1.7
2,384,973 + -0.7
2,385,090 - -0.1
2,385,172 - -0.1
2,385,193 + +0.9
2,385,193 + -1.1
2,385,194 - +1.5
2,385,214 + +0.5
2,385,274 - +0.1
2,385,274 - -1.5
2,385,274 - +0.3
2,385,351 + EX28DRAFT_2364 0.11 -0.6
2,385,351 + EX28DRAFT_2364 0.11 +0.4
2,385,979 - EX28DRAFT_2364 0.69 -0.6
2,385,979 - EX28DRAFT_2364 0.69 +0.3
2,386,044 + EX28DRAFT_2364 0.75 +0.2
2,386,146 - EX28DRAFT_2364 0.84 -1.2
2,386,249 - +0.4
2,386,334 + +0.3
2,386,334 + -0.2
2,386,336 + -0.6
2,386,341 - -0.7
2,386,341 - -0.2
2,386,354 - -0.2
2,386,390 + +0.0
2,386,390 + +0.3
2,386,391 - -0.1
2,386,391 - -0.5
2,386,398 - +0.2
2,386,482 - EX28DRAFT_2365 0.14 +0.6
2,386,484 + EX28DRAFT_2365 0.14 +0.1
2,386,484 + EX28DRAFT_2365 0.14 -0.1
2,386,485 - EX28DRAFT_2365 0.15 -1.1
2,386,485 - EX28DRAFT_2365 0.15 -0.4
2,386,787 + EX28DRAFT_2365 0.55 +1.9
2,386,824 - EX28DRAFT_2365 0.60 -1.2
2,386,953 - EX28DRAFT_2365 0.77 +0.1
2,387,219 + +1.5
2,387,219 + -2.1
2,387,252 - +0.3
2,387,261 - -0.8
2,387,263 + -0.1
2,387,264 - -1.4
2,387,288 + -1.6
2,387,288 + -0.9
2,387,300 - +1.8

Or see this region's nucleotide sequence