Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2054 and EX28DRAFT_2055 are separated by 159 nucleotides EX28DRAFT_2055 and EX28DRAFT_2056 overlap by 4 nucleotides
EX28DRAFT_2054: EX28DRAFT_2054 - RND family efflux transporter, MFP subunit, at 2,075,438 to 2,076,553
_2054
EX28DRAFT_2055: EX28DRAFT_2055 - Uncharacterized protein conserved in bacteria, at 2,076,713 to 2,077,669
_2055
EX28DRAFT_2056: EX28DRAFT_2056 - Predicted ATP-dependent endonuclease of the OLD family, at 2,077,666 to 2,079,324
_2056
Position (kb)
2076
2077
2078 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2075.727 kb on + strand, within EX28DRAFT_2054 at 2075.728 kb on - strand, within EX28DRAFT_2054 at 2075.728 kb on - strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.737 kb on + strand, within EX28DRAFT_2054 at 2075.819 kb on - strand, within EX28DRAFT_2054 at 2075.842 kb on + strand, within EX28DRAFT_2054 at 2075.842 kb on + strand, within EX28DRAFT_2054 at 2076.113 kb on - strand, within EX28DRAFT_2054 at 2076.113 kb on - strand, within EX28DRAFT_2054 at 2076.116 kb on + strand, within EX28DRAFT_2054 at 2076.134 kb on - strand, within EX28DRAFT_2054 at 2076.448 kb on - strand at 2076.497 kb on + strand at 2076.553 kb on + strand at 2076.558 kb on - strand at 2076.567 kb on - strand at 2076.584 kb on + strand at 2076.689 kb on - strand at 2076.709 kb on + strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2077.228 kb on + strand, within EX28DRAFT_2055 at 2077.432 kb on + strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.540 kb on + strand, within EX28DRAFT_2055 at 2077.541 kb on - strand, within EX28DRAFT_2055 at 2077.893 kb on - strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.989 kb on - strand, within EX28DRAFT_2056 at 2078.368 kb on - strand, within EX28DRAFT_2056
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,075,727 + EX28DRAFT_2054 0.26 +0.2 2,075,728 - EX28DRAFT_2054 0.26 -3.6 2,075,728 - EX28DRAFT_2054 0.26 -0.6 2,075,730 + EX28DRAFT_2054 0.26 +0.5 2,075,730 + EX28DRAFT_2054 0.26 +0.2 2,075,730 + EX28DRAFT_2054 0.26 -0.2 2,075,737 + EX28DRAFT_2054 0.27 +0.6 2,075,819 - EX28DRAFT_2054 0.34 +0.5 2,075,842 + EX28DRAFT_2054 0.36 +0.7 2,075,842 + EX28DRAFT_2054 0.36 -0.8 2,076,113 - EX28DRAFT_2054 0.60 +1.2 2,076,113 - EX28DRAFT_2054 0.60 -0.2 2,076,116 + EX28DRAFT_2054 0.61 +1.3 2,076,134 - EX28DRAFT_2054 0.62 -0.0 2,076,448 - -0.7 2,076,497 + -2.3 2,076,553 + -5.1 2,076,558 - -0.4 2,076,567 - +0.1 2,076,584 + -1.7 2,076,689 - +0.2 2,076,709 + +0.2 2,076,710 - +0.3 2,076,710 - -0.2 2,076,710 - +1.0 2,076,710 - -0.3 2,077,228 + EX28DRAFT_2055 0.54 -0.3 2,077,432 + EX28DRAFT_2055 0.75 -1.9 2,077,433 - EX28DRAFT_2055 0.75 -0.3 2,077,433 - EX28DRAFT_2055 0.75 -0.4 2,077,433 - EX28DRAFT_2055 0.75 +0.6 2,077,433 - EX28DRAFT_2055 0.75 +2.3 2,077,540 + EX28DRAFT_2055 0.86 +0.3 2,077,541 - EX28DRAFT_2055 0.87 -0.8 2,077,893 - EX28DRAFT_2056 0.14 +0.2 2,077,896 + EX28DRAFT_2056 0.14 +1.0 2,077,896 + EX28DRAFT_2056 0.14 +0.7 2,077,896 + EX28DRAFT_2056 0.14 +0.7 2,077,897 - EX28DRAFT_2056 0.14 +0.1 2,077,897 - EX28DRAFT_2056 0.14 -0.3 2,077,897 - EX28DRAFT_2056 0.14 +0.4 2,077,897 - EX28DRAFT_2056 0.14 +1.0 2,077,989 - EX28DRAFT_2056 0.19 -0.7 2,078,368 - EX28DRAFT_2056 0.42 +0.1
Or see this region's nucleotide sequence