Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1507 and EX28DRAFT_1508 are separated by 38 nucleotides EX28DRAFT_1508 and EX28DRAFT_1509 overlap by 14 nucleotides EX28DRAFT_1509 and EX28DRAFT_1510 are separated by 118 nucleotides EX28DRAFT_1510 and EX28DRAFT_1511 are separated by 133 nucleotides
EX28DRAFT_1507: EX28DRAFT_1507 - V8-like Glu-specific endopeptidase, at 1,523,017 to 1,523,838
_1507
EX28DRAFT_1508: EX28DRAFT_1508 - Membrane transporters of cations and cationic drugs, at 1,523,877 to 1,524,206
_1508
EX28DRAFT_1509: EX28DRAFT_1509 - Membrane transporters of cations and cationic drugs, at 1,524,193 to 1,524,555
_1509
EX28DRAFT_1510: EX28DRAFT_1510 - hypothetical protein, at 1,524,674 to 1,524,844
_1510
EX28DRAFT_1511: EX28DRAFT_1511 - Predicted permease, at 1,524,978 to 1,526,012
_1511
Position (kb)
1523
1524
1525 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1522.878 kb on - strand at 1522.918 kb on + strand at 1522.959 kb on - strand at 1522.961 kb on - strand at 1522.964 kb on - strand at 1522.987 kb on + strand at 1522.993 kb on + strand at 1522.994 kb on - strand at 1522.997 kb on + strand at 1523.017 kb on - strand at 1523.023 kb on - strand at 1523.118 kb on - strand, within EX28DRAFT_1507 at 1523.188 kb on - strand, within EX28DRAFT_1507 at 1523.220 kb on - strand, within EX28DRAFT_1507 at 1523.220 kb on - strand, within EX28DRAFT_1507 at 1523.469 kb on - strand, within EX28DRAFT_1507 at 1523.469 kb on - strand, within EX28DRAFT_1507 at 1523.504 kb on + strand, within EX28DRAFT_1507 at 1523.603 kb on - strand, within EX28DRAFT_1507 at 1523.605 kb on - strand, within EX28DRAFT_1507 at 1523.605 kb on - strand, within EX28DRAFT_1507 at 1523.619 kb on + strand, within EX28DRAFT_1507 at 1523.668 kb on - strand, within EX28DRAFT_1507 at 1523.889 kb on + strand at 1523.889 kb on + strand at 1523.890 kb on - strand at 1523.944 kb on - strand, within EX28DRAFT_1508 at 1524.025 kb on - strand, within EX28DRAFT_1508 at 1524.539 kb on - strand at 1524.539 kb on - strand at 1524.676 kb on - strand at 1524.677 kb on + strand at 1524.678 kb on - strand at 1524.730 kb on - strand, within EX28DRAFT_1510 at 1524.732 kb on - strand, within EX28DRAFT_1510 at 1524.753 kb on + strand, within EX28DRAFT_1510 at 1524.767 kb on - strand, within EX28DRAFT_1510 at 1525.046 kb on - strand at 1525.077 kb on - strand at 1525.088 kb on + strand, within EX28DRAFT_1511 at 1525.119 kb on - strand, within EX28DRAFT_1511
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,522,878 - +1.0 1,522,918 + -0.3 1,522,959 - -1.6 1,522,961 - -0.8 1,522,964 - -0.6 1,522,987 + +1.4 1,522,993 + +0.2 1,522,994 - +1.8 1,522,997 + -2.6 1,523,017 - +0.5 1,523,023 - +2.2 1,523,118 - EX28DRAFT_1507 0.12 +0.4 1,523,188 - EX28DRAFT_1507 0.21 -0.5 1,523,220 - EX28DRAFT_1507 0.25 +0.0 1,523,220 - EX28DRAFT_1507 0.25 +1.3 1,523,469 - EX28DRAFT_1507 0.55 -0.2 1,523,469 - EX28DRAFT_1507 0.55 +0.6 1,523,504 + EX28DRAFT_1507 0.59 +0.2 1,523,603 - EX28DRAFT_1507 0.71 +0.0 1,523,605 - EX28DRAFT_1507 0.72 +0.7 1,523,605 - EX28DRAFT_1507 0.72 +1.4 1,523,619 + EX28DRAFT_1507 0.73 -0.1 1,523,668 - EX28DRAFT_1507 0.79 -0.2 1,523,889 + +1.0 1,523,889 + +0.3 1,523,890 - -0.3 1,523,944 - EX28DRAFT_1508 0.20 -0.5 1,524,025 - EX28DRAFT_1508 0.45 -3.8 1,524,539 - -0.3 1,524,539 - +0.6 1,524,676 - +0.2 1,524,677 + -0.0 1,524,678 - +1.2 1,524,730 - EX28DRAFT_1510 0.33 -0.0 1,524,732 - EX28DRAFT_1510 0.34 -0.6 1,524,753 + EX28DRAFT_1510 0.46 -1.9 1,524,767 - EX28DRAFT_1510 0.54 +0.5 1,525,046 - -2.8 1,525,077 - -3.2 1,525,088 + EX28DRAFT_1511 0.11 -0.8 1,525,119 - EX28DRAFT_1511 0.14 +0.5
Or see this region's nucleotide sequence